Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2345 ATGCAAGTCCTGCAAACCTCTTATCTCTTCTTCCCTTTCCCTAAACCCCTAAACCCATCCCCTCGTCGCTTCCACCCCCGTCCTCCGCCGTTCCTTCACGGGCCCCTCTCCGGCACCCTCCTCGTCCCCAGATCCTTCAGCTCCGACGAGTTCCCGGTGGACGAGACCGTCCTGGAGAGCTTCGGGCCCAAGGACAAGGAAACCGAGGACGAGGCCCGACGGCGCAACTGGATCGAGCGCGGGTGGGCCCCGTGGGAGGAAATCCTCACCCCGGAGGCGGACTTCGCGCGCAAGAGCCTCAACGAAGGCGAGGAGGTTCCCCTGCGCTCCCCCGAGGCCGTTGAGGCGTTCAAGATGCTGAGCCCTAGCTACCGCAAGAAGAAGATGGAGGAGATGGGCCTGACCGAGGAGGAGTTCTTCGCGAAGCAGTTCGAGATCAAGGGCGAGATTCCGGAGCCGCTCGCGACCACGTGGGCGGGGCCGCTCGTCGTCCGCCTCGTGCCGCCGCGCGACTGGCCGCCGACCGGGTGGCGCGTGGACCGGGAGGAGCTCGCGTTCGTCCGCGAGGCGCACAGGATGCAGGCGAGGAGGGTGAGGTTGGAGGAGGTGGAGAGGGGAGTGAGGACGGAGACGGATGGTGTGTGTTTGGATAGGTACAAGGTGTTTCTGAAGCAGTATAAGGAGTGGGTGGAGGCTAATAAGGATAGATTGGAAGAGGAGTCTTATAAGCAAGACCAAGATTATTACCCTGGTAGAAGGAAAAGAGGGAAGGACTACAAGGAGGGCATGTATGAGCTTCCGTTCTATTATCCTGGCCAAATTTGTGTAGGGAAGGTGACAATGTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGCGGGGTACATGATGGGTGGGTTCCTATAAAGAACAATGATTGGTATTGGATTCGCCATCACATAAAAGTGGGTATGCACGTCATTGTTGAAATTACGGCAAAGCGAGATCCTTATCGCTTCCGTTTTCCTATTGAACTTCGTTTTGTTGATCCAAATATTGATCATCTGATCTTTAACAGATTCGACTTCCCACCAATATTTCATCGGGATGAAGATACTAATGAAGATGAATTACGGCGTGACAGTGGAAGACCTCCTGTTCCTAGAAAAGATCCAGGAGACAAGCCAGAGGAAGAACCTCTACTGTCTAATCATCCATATGTCGATAAGTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCGATTAATCCTGATAAATATAAAGGCAAAAAACTGTCAGACTTGGCTGATGAAGAAGATTTTGATGAACAAAATGCTGTTCAGTATACAAAAGTTCATTATAAGAAGACATTACTACCACAAACAACTCTGAAAACAAGTGTCAAAGAGCTCGACTTAGAGGCTGCACTTGCTGAGCGTGAGCTCCATATTAAACTAAGGAAGGAAGCAAACGACAGAGGTGAGAAATACAAAATTACCAAACTGAGGCGCAATGTTGAGATGGATGAGTATGACTACATGCATTGGCGTAGATCATTTGAGGAAAGAGAAGCATTGATTAGAGACATCAGCTGTCGCAAAGCTCTTGGTCTGCCATTGGAAGAGCCAGGAAGGTATATGGATGCTAGTTATTTTGGTAAAGACCAATATGATCCTACAAATCCTCTGTATCGTTATGACTACTGGGGGGAACCCAAGAATTCAGAGAAGAGCATGCAAGAGCGGATGACAGATAtccataacaaaaaaattgtgggCAAAGGCAATGTTTGGTATGAAATGTCGTATGAAGATTGCATCAAGCAACAGATGGAAAGAGAAGCCCGGTCTAAGGAACAAGAAGGCGAAGaagttaaaaatgaagataCAAGGCAAGGTCAAGGTGATGAAGATGAGGATGACGACGACGATGATTTTGACTTCAGTATTCTGAGCAGTCTCGGTAATAATTTCTCAGATCAGCCTCATGTTAATGGGACCGAGTCTTCTACAATATCAGGTGAGGGCATGTTTGAGGATTGA 2037 0.485 MQVLQTSYLFFPFPKPLNPSPRRFHPRPPPFLHGPLSGTLLVPRSFSSDEFPVDETVLESFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAVEAFKMLSPSYRKKKMEEMGLTEEEFFAKQFEIKGEIPEPLATTWAGPLVVRLVPPRDWPPTGWRVDREELAFVREAHRMQARRVRLEEVERGVRTETDGVCLDRYKVFLKQYKEWVEANKDRLEEESYKQDQDYYPGRRKRGKDYKEGMYELPFYYPGQICVGKVTMLHLYQGAFVDIGGVHDGWVPIKNNDWYWIRHHIKVGMHVIVEITAKRDPYRFRFPIELRFVDPNIDHLIFNRFDFPPIFHRDEDTNEDELRRDSGRPPVPRKDPGDKPEEEPLLSNHPYVDKLWQINVAEQMILDDMAINPDKYKGKKLSDLADEEDFDEQNAVQYTKVHYKKTLLPQTTLKTSVKELDLEAALAERELHIKLRKEANDRGEKYKITKLRRNVEMDEYDYMHWRRSFEEREALIRDISCRKALGLPLEEPGRYMDASYFGKDQYDPTNPLYRYDYWGEPKNSEKSMQERMTDIHNKKIVGKGNVWYEMSYEDCIKQQMEREARSKEQEGEEVKNEDTRQGQGDEDEDDDDDDFDFSILSSLGNNFSDQPHVNGTESSTISGEGMFED 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2345 678 Coils Coil 606 626 - -
Ssu1g2345 678 MobiDBLite consensus disorder prediction 609 678 - -
Ssu1g2345 678 SUPERFAMILY Nucleic acid-binding proteins 268 327 IPR012340 -
Ssu1g2345 678 MobiDBLite consensus disorder prediction 365 395 - -
Ssu1g2345 678 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 39 664 IPR044967 GO:0000427|GO:0003723
Ssu1g2345 678 MobiDBLite consensus disorder prediction 632 646 - -
Ssu1g2345 678 MobiDBLite consensus disorder prediction 609 631 - -
Ssu1g2345 678 MobiDBLite consensus disorder prediction 648 672 - -
Ssu1g2345 678 ProSiteProfiles S1 domain profile. 272 340 IPR003029 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2345 - - gmx:100783002 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2345 1 65754796 65762275 Ssu1g2345 1 65754796 65762275 ECH