Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2334 ATGCTGAAATCAACCTTCACTCCCATTTTCTGGGTGTTTACCCCCAAACCCAAATCTCCAAAACTACCATCCCGCGCAATCACCAGCACCTTCATAAACAGCACGCCACTCGTTCGACACAACGCCTCTCTCAACCCCAACACCCCACTTCCCCCTTCTTCAGCCTACATTCACCTCCCTTTCTGTCGAAAACGCTGCCACTACTGCGGCTTCCCCATCGTCGCTCTCGGCTCCGCCTCAACCCAAGCCCACGACGACCCACGAGTCTCTAACTACATACACTGGCTCTGCAGAGAAATCAGTGCCACCAAAGTGGATCAACCTGATGCCAAGGCACCCCTTCAAACGGTCTACTTTGGGGGTGGAACACCCTCCCTCGTACCTCCCAAGATGGTTTCCTCGGTTTTGGAGACTCTGAGGATGAAGTTTGGGCTGCGTGAGGGTGCTGAGATATCGATGGAAATGGACCCGGGCACGTTTGATGCTGAGAAGATGCAAGAGATGGTGTTGTTGGGGGTGAATAGAGTGTCTTTGGGAGTTCAAGCGTTTCAGGAGGAGCTGTTGAGAGCTTGTGGGAGGGCACATGGGCTGAAAGAGGTTCATGAGGCTATTGATGTTGTCAAGTCATGTGGGGTTGAGAATTGGAGTGTTGATCTGATAGCCTCACTGCCTCATCAGACTAGTGACATGTGGGAGGAAAGTCTAAGGCTCACCATTGAGTCACAACCAACTCATGTGTCGGTTTATGACTTGCAGATTGAGCAAGGCACAAAATTTGGACGACTGTACTCACCAGGGAAATTCCCAATGCCTTCTGAAATACAATCAGCTGAGTTCTATAAGATGGCTTCAAGAATGCTTTGTGATGCAAATTACAACCATTACGAAATCAGCAGCTACTGCAAGAGTGGATATGAGTGCAAACACAACTATACCTATTGGAAGAACAAGCCTTTCTATGGCTTTGGCCTTGGCTCTGCTAGTTTTGTTGGTGGGTTGAGGTTTTCAAGACCAAAGAAAGTGAACGATTACATTAGTTTTGTGCAGAATCTGGAAAATGGATTAGCAAATAGCTCTGTCGATGGCCACATTCATGGCAAGGACACAGCCATGGATGTGGTGATGCTGTCCCTTAGAACTGCACGTGGCCTAGACTTAAAGTGCTTCCAAGAATCATTTGGCAGCTCTGTCGTTTTGTCTTTGCTTGAGGCTTATAAACCTTATGTTGAGAGTGGACTTGTGATTTGCTTGGACGAGCGTAGGAGAACCATTAGAATTGATGAccttaataattcttttttgaataaaactaATACAGAAAGGAGGGTGGCTTATATAAGGCTAAGCGATCCAGAAGGCTTCCTCTTATCAAATGAGTTAATAGCCCTTGCTTTTGGGGTCATTGACTCTTGGAAGGATTGCCCTCCGTACTAA 1434 0.4679 MLKSTFTPIFWVFTPKPKSPKLPSRAITSTFINSTPLVRHNASLNPNTPLPPSSAYIHLPFCRKRCHYCGFPIVALGSASTQAHDDPRVSNYIHWLCREISATKVDQPDAKAPLQTVYFGGGTPSLVPPKMVSSVLETLRMKFGLREGAEISMEMDPGTFDAEKMQEMVLLGVNRVSLGVQAFQEELLRACGRAHGLKEVHEAIDVVKSCGVENWSVDLIASLPHQTSDMWEESLRLTIESQPTHVSVYDLQIEQGTKFGRLYSPGKFPMPSEIQSAEFYKMASRMLCDANYNHYEISSYCKSGYECKHNYTYWKNKPFYGFGLGSASFVGGLRFSRPKKVNDYISFVQNLENGLANSSVDGHIHGKDTAMDVVMLSLRTARGLDLKCFQESFGSSVVLSLLEAYKPYVESGLVICLDERRRTIRIDDLNNSFLNKTNTERRVAYIRLSDPEGFLLSNELIALAFGVIDSWKDCPPY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2334 477 Gene3D tm_1862 like domain 60 282 IPR023404 -
Ssu1g2334 477 SMART MiaB 52 282 IPR006638 GO:0003824|GO:0051536
Ssu1g2334 477 PANTHER COPROPORPHYRINIGEN III OXIDASE 1 467 IPR034505 -
Ssu1g2334 477 SFLD Radical SAM 52 420 IPR007197 GO:0003824|GO:0051536
Ssu1g2334 477 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 467 - -
Ssu1g2334 477 SFLD HemN-like, clustered with heat shock genes 52 420 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Ssu1g2334 477 SUPERFAMILY Radical SAM enzymes 47 422 - -
Ssu1g2334 477 CDD Radical_SAM 62 280 - -
Ssu1g2334 477 Pfam Radical SAM superfamily 57 237 IPR007197 GO:0003824|GO:0051536
Ssu1g2334 477 ProSiteProfiles Radical SAM core domain profile. 47 291 IPR007197 GO:0003824|GO:0051536
Ssu1g2334 477 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 54 415 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2334 - K07739 gmx:100779022 848.58