Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2324 ATGGCGGATAAGTTGGGAGCAGCAGAAGACAGCTCTAATTCGAAGGCTCTTCACCAAACGACCACGAAGCTCGTCGTTTTGGCCGACCTCAACGTCGATCCTCCCGAAGCCGAAGCCGAAGACGACGATTCTTCTCTTGTCCCTCCTCCTCCAGTTACCACtttgACAAACGACGAAAACAGTCAAGATAAGAGTTTGTTGTCCAAAGACACTGATAGCATTGAAGGCGAAAGTAAAAAGTTGAACAAACTGGGCAAATGCCGCTCCAGACTTAGCAAGACAGATTCTTCTCTTGATTGTGGAGCTGATGCAGATGGTGATCAACATGTTCAAGGGCCTCCTTCGTCTCGGGAGGAAAAAGTTAGCAGTGTCAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGGCTGTGTTGGCTTATGAGAAGGCAGAAGAGATCTTGCTCAGGTCTGAGGCTGAGATTGATAGGCCAGAGTTGCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCATCAGAAAATAGTTCAGATAAAGAACTTGAACCTCATGAACTTGAAGAGATTCTTTCTAAGCTGAAAGAGTCAGTGCAGTCAGATATCAGACAAACAGCTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGGCCATTGCACCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGGTTATCTTCAAATTGGGAATTTGGAATTATCTGCAAAATGTTtccaaaaattgattctaaaaGATCAAAACCATCCTGCAGCTTTGGTCAATTATGCCGCCCTTCTTTTGTGTAAATATGCTTCAGTTGTAGCAGGTCCTGGTGCAAGTGCTGCTGAAGGCGCCATGGCTGATCAGATCACGGCTGCTAATGTTGCTAAGGAATGTTTGTTGGCTGCAATTAAAGCAGATAGCAAATCAGCCCATGTCTGGGCAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCAGCCAAACTGGAACCCAATTGCATGTCTACTCGATATGCTGTTGCTATCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTAATGAACTGCTTTCATGTGCTGGAAATGAGATGGCTTCTATAATAAGAGATGGTGATTCATCCCTGGTTGAGCTTCCAATAGCATGGGCTGGGCTGGCCATGGTTCACAAGGGTCAGCATGAGATATCGGCAGCATATGAAAGTGAACAGCACGGGCTGAGGGAAGTTGAAGAGCGTGCTGTTTGCAGTTTAAAGCAgGCTATAGCAGAAGATCCCGATGATGCTGTGCAGTGGCACCAACTTGGCGTTCATAGTCTCTGTGCTCGGCAATTCAAAACATCGCAAAAGTACCTCAAAGCTGCTGTTGCCTGTGACAAGGATTGCAGCTATGCATGGTCTAACCTAGGTGTCTCACTTCAACTATCAGAAGAACCATCACAAGCTGAAGAAGTATACAAGCAAGCATTGTCTTTGGCAACAACTCAACAAGCGCATGCTATATTATCCAACTTGGGAATTCTCTATCGCCATCAGAAACAATATCATCGCGCGAAGGCTATGTTTACAAAGTCACTTGAACTACAGCCTGGGTATGCTCCTGCATTCAACAATCTGGGTCTTGTGTTCGTTGCTGAGGGTCTTCTGGAAGAGGCCAAGTATTGTTTTGACAAAGCCCTCCAATCAGATCCATTGCTGGATGCAGCTAAGTCAAATTTGATTAAGGTGGTTACTATGTCAAAGTTATGCAAGGGCCTCTCCTCATGCGCTCTTAAAGAATGA 1941 0.442 MADKLGAAEDSSNSKALHQTTTKLVVLADLNVDPPEAEAEDDDSSLVPPPPVTTLTNDENSQDKSLLSKDTDSIEGESKKLNKLGKCRSRLSKTDSSLDCGADADGDQHVQGPPSSREEKVSSVKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRSEAEIDRPELLSLVQIHHAQCLILESSSENSSDKELEPHELEEILSKLKESVQSDIRQTAVWNTLGFILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIGYLQIGNLELSAKCFQKLILKDQNHPAALVNYAALLLCKYASVVAGPGASAAEGAMADQITAANVAKECLLAAIKADSKSAHVWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPNELLSCAGNEMASIIRDGDSSLVELPIAWAGLAMVHKGQHEISAAYESEQHGLREVEERAVCSLKQAIAEDPDDAVQWHQLGVHSLCARQFKTSQKYLKAAVACDKDCSYAWSNLGVSLQLSEEPSQAEEVYKQALSLATTQQAHAILSNLGILYRHQKQYHRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFDKALQSDPLLDAAKSNLIKVVTMSKLCKGLSSCALKE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2324 646 Gene3D Tetratricopeptide repeat domain 66 318 IPR011990 GO:0005515
Ssu1g2324 646 ProSiteProfiles TPR repeat profile. 552 585 IPR019734 GO:0005515
Ssu1g2324 646 SUPERFAMILY TPR-like 465 617 IPR011990 GO:0005515
Ssu1g2324 646 SMART tpr_5 230 263 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 552 585 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 264 297 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 353 386 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 516 549 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 433 466 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 482 515 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 586 619 IPR019734 GO:0005515
Ssu1g2324 646 SMART tpr_5 139 172 IPR019734 GO:0005515
Ssu1g2324 646 MobiDBLite consensus disorder prediction 1 74 - -
Ssu1g2324 646 Pfam Tetratricopeptide repeat 586 617 IPR019734 GO:0005515
Ssu1g2324 646 Pfam Tetratricopeptide repeat 353 386 IPR019734 GO:0005515
Ssu1g2324 646 Gene3D Tetratricopeptide repeat domain 464 550 IPR011990 GO:0005515
Ssu1g2324 646 Gene3D Tetratricopeptide repeat domain 319 421 IPR011990 GO:0005515
Ssu1g2324 646 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 11 643 - -
Ssu1g2324 646 MobiDBLite consensus disorder prediction 12 26 - -
Ssu1g2324 646 Pfam Tetratricopeptide repeat 518 582 - -
Ssu1g2324 646 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 11 643 - -
Ssu1g2324 646 ProSiteProfiles TPR repeat profile. 353 386 IPR019734 GO:0005515
Ssu1g2324 646 SUPERFAMILY TPR-like 338 397 IPR011990 GO:0005515
Ssu1g2324 646 ProSiteProfiles TPR repeat profile. 586 619 IPR019734 GO:0005515
Ssu1g2324 646 SUPERFAMILY TPR-like 133 309 IPR011990 GO:0005515
Ssu1g2324 646 MobiDBLite consensus disorder prediction 95 122 - -
Ssu1g2324 646 Gene3D Tetratricopeptide repeat domain 551 637 IPR011990 GO:0005515
Ssu1g2324 646 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2324 467 618 Glycosyltransferase AT3G04240 25.490 2.16e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2324 - - gmx:100820184 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2324 1 65335736 65346513 Ssu1g2324 1 65335736 65346513 ECH