Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2308 ATGAGCAGCCAAACTCGCCCGCTACCAGCTACCCCTAAGATGCAGCAAAGGAAGGAAAGACGCATGTTCTCCACTTCTGATGACAGTGCCATGACGAAGCAAGTTCAGGCCACGCATGCCCCTGATGGTCGTGAAATTGATGTCAAGCCCATTCTCCAAATCGTGGACGAAATCTTGGTTCGATTCATTGCCCGCACTGTTGAGGGTTATGAAGTAAAACAAGACCAAGATGCGTTGGAGATGACAGCTGCTCTGGCTGAATTTGATATGCTTGACTCGCTGGCTTATGTCATAAACAAAATTTCGTGCGAGCTATCATGCAAGTGCTCGGGAGGGGGAGATGCACATTCATCAACAATAGTGTTACTGAATTACATGTCTAGCTATGCATGGCATGCGAAAGTTGTGTTAACCTTAGCAGCCTTTGCTGTTATTTTTGGAGAGTTTTGGCTTGTTGCTCAGTTGAGTGCTGGAAATACACTTGCCAAGTCTGTGGCCCTCCTTAAGCAACTGCCTGACATTGCAGAGAATTTTATGTCCTTGAAACCCCATTTTGAAGCACTCATTAGGCTCGTGAAGGCGGCATTGGATGTAACCATGTGCATTGTTGAATTCAAAGAGCTACCATCTGAATATATTTCAGAGGACACACCTCCTATGTCTGTTGCCAGTACTAACATTCCTATTGCTTCCTATTGGGTCATCCGAAGTATTGTGGCTTGTGCCTCACAAATTGCTAGTCTCATAGGCATGAGGAATGAGTCCATTTCATCAGCCACAGAGGCATGGGAATTATCTAGTCTGGCTCACAAAGTTAGTAGTATATATGAGCATCTCAAGAACCAACTGGTTCTTTGCTACCAATATATAGATGACAAGAGGCATATTGAGGCCTTCCATAATCTGATACGTCTTTTCGAGACAGTCCATGTAGACAACATGAAAATTCTCAGAGCACTGATATATACAAAGGATGATATTCTTCCACTCATAGATGGAACCACAAAATCAAGGGTTAGTCTCGAGGTACTGAGGAGGAAACATGTGTTGCTGCTCATATCAGATCTTGATCTTTCACAAGAAGAGATCCTGGTACTTGATAACTTGTATAAAGATGCACGAACGAGGGATATATATTATGAGATGGTATGGATCCCAGTTGTGGACAAAGCCACCTGGAATGATGTGAATAAACAGAAGTTTGAGTATTTGCAATCATTGATGGCATGGTACAGTGTCTGTGATCCTTTCATCATTGAACCATCAGCAATAAAGTATATCAAAGAAGTGTGGAATTTCACAAAGAGAGCTATTTTGGTGGCCCTTGATCCACAAGGCAGATTGTCCTCCCCTAATGCTATCCATATGATATGGATTTGGGGAAATCTGGCCTTCCCTTTCACAAGTGAGAAAGAAGAATCCCTGTGGAAGCAAGAGATTTGGAGCCTTGAGCTGCTTGTTGATGGCATTGATCCTACAGTTCTGGAATGGATGACTACAGAGGGGAAACTCGTATGCCTGTATGGAGGCGAAGATCTGGAGTGGATTGAGAAATTCACAACCACCGCACTGAGTGTTGCAAAGGCTGGCAAGTTCCAGCTAGAGATGGCTTACGTGGGAAAGAGCAACGCCAAGGAGCGGATGCAGAAAATGATCACAACCTTCACCGAAAGAAAGTTCAGCTACTTCTGGCCCAACGTGACGTCCATTTGGTTCTTCTGGACGCGTTTGGAGAGCATGTTGTACTCCAAGTTGCAGCACGGGAGGACCGTGGAAAAAGACCAGATCATGAGTGAGGTCATGACCGTGCTCAGCTTTGACGGCAGTGATCGCGGGTGGGCAATATTCTGCAGTGGCGCCACCGAAATGGCCAGAGCCAAGGGCGACAGTGCTCTAATCTGTTTGCAGGACTTTGATAAGTGGAAGGATAGGATTGAGGAAGAAGGTGGTGTGGTGCCTGCAATGAATGACTATCTGAACAAAAACAAACCCCCACATCACTGCAATCGCCTCATCCTTCCTGGGAGCACTGGGGGCATACCCCAGAAGGTTGTGTGTGCTGAATGTGGACGCCCAATGGAGAAATACTTCATGTATCGCTGCTGTGTGGAGTAA 2115 0.4558 MSSQTRPLPATPKMQQRKERRMFSTSDDSAMTKQVQATHAPDGREIDVKPILQIVDEILVRFIARTVEGYEVKQDQDALEMTAALAEFDMLDSLAYVINKISCELSCKCSGGGDAHSSTIVLLNYMSSYAWHAKVVLTLAAFAVIFGEFWLVAQLSAGNTLAKSVALLKQLPDIAENFMSLKPHFEALIRLVKAALDVTMCIVEFKELPSEYISEDTPPMSVASTNIPIASYWVIRSIVACASQIASLIGMRNESISSATEAWELSSLAHKVSSIYEHLKNQLVLCYQYIDDKRHIEAFHNLIRLFETVHVDNMKILRALIYTKDDILPLIDGTTKSRVSLEVLRRKHVLLLISDLDLSQEEILVLDNLYKDARTRDIYYEMVWIPVVDKATWNDVNKQKFEYLQSLMAWYSVCDPFIIEPSAIKYIKEVWNFTKRAILVALDPQGRLSSPNAIHMIWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPTVLEWMTTEGKLVCLYGGEDLEWIEKFTTTALSVAKAGKFQLEMAYVGKSNAKERMQKMITTFTERKFSYFWPNVTSIWFFWTRLESMLYSKLQHGRTVEKDQIMSEVMTVLSFDGSDRGWAIFCSGATEMARAKGDSALICLQDFDKWKDRIEEEGGVVPAMNDYLNKNKPPHHCNRLILPGSTGGIPQKVVCAECGRPMEKYFMYRCCVE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2308 704 MobiDBLite consensus disorder prediction 1 40 - -
Ssu1g2308 704 Pfam Sieve element occlusion N-terminus 26 310 IPR027942 -
Ssu1g2308 704 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 11 703 - -
Ssu1g2308 704 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 11 703 IPR039299 GO:0010088
Ssu1g2308 704 Pfam Sieve element occlusion C-terminus 471 702 IPR027944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2308 Ssu-Chr1 65062243 65068009 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2308 - - gmx:100811452 1315.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2308 1 65062243 65068009 Ssu1g2308 1 65062243 65068009 ECH