Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2305 ATGGACAGCTTGGAAAAATATGGAGTGGGAATCATTGACCCACAAAATCTATATGACTTTTACAATGACTATCACAGTTACCTTGTCAGCTGTGGTGTGGATGGAGTCAAGGTAGATGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGATGTGTTTCATTGACCAAACAGTATCAAGAAGCACTAGAGAAATCTGTAACAAAGAACTTTAAGGACAACAACCTCATTTGCTGCATGTCTCACAGCTCTGATTCAATTTACAGTTCAAAGAAGAGTGCAGTAGCAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTTCAAACCTTGCACATTGCTTCTGTCGCGTTTAACAGTTTTCTTCTGGGAGAGATATTTGTGCCAGACTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAATAGGTGGTTGTGCAGTATATGTTAGTGACAAGCCTGGcaatcatgattttaaaatccTCAAGAAGTTAGTGCTGCCTGATGGATCAGTCTTGAGAGCAAGAAATGCTGGCCGCCCTACTCGAGATTGTTTATTTGAAGACCCCGTAATGGATGGTAAAAGTCTGCTGAAAATTTGGAATTTGAATGTTCTGACTGGGGTGGTAGGCGTCTTCAATTGCCAAGGAGTAGGAAGCTGGCCACTGAAATCATTGGAAGCCACACCTTTGCGCACAACCATTTCAGGGAAAGTGAGGCCCCTTGATGTAGAATTTCTTGAAGAGGTTGCAGGTGAAAATTGGAATGGAGATTGCGCAGTATATGCCTTCAATGCAGGCTTCCTTTCCAAGGTGTCGAGTAGAGGAAAACTAGACGTGTCCCTGGAAACTCTCCAGTGTGAAATATATACAGTATCTCCAATAAGGGTGTTTGGTCATGATGTGCAATTTGCACCAATAGGATTGCTTGACATGTACAATTCGGGAGGAGCAGTAGAAGCCCTGGACTGCACCATGGATGTTGCACAGtgcataataaaaatcaaaggcAGAGGATGTGGCCGTTTTGGAGCCTACTCCAACGTTAGACCGAAACGTTGTATAGTGGAAATGAAGGAGGAGGAGTTCTCCTACAACCCTGAAGATGGATTATTGACTATTAAACTTGGTGAAGGCAATTCAAGGGACATAGAATTTGTATACTGA 1197 0.4244 MDSLEKYGVGIIDPQNLYDFYNDYHSYLVSCGVDGVKVDVQNLIETLGSGYGGCVSLTKQYQEALEKSVTKNFKDNNLICCMSHSSDSIYSSKKSAVARASEDFMPREPTFQTLHIASVAFNSFLLGEIFVPDWDMFHSKHETAEFHAAARAIGGCAVYVSDKPGNHDFKILKKLVLPDGSVLRARNAGRPTRDCLFEDPVMDGKSLLKIWNLNVLTGVVGVFNCQGVGSWPLKSLEATPLRTTISGKVRPLDVEFLEEVAGENWNGDCAVYAFNAGFLSKVSSRGKLDVSLETLQCEIYTVSPIRVFGHDVQFAPIGLLDMYNSGGAVEALDCTMDVAQCIIKIKGRGCGRFGAYSNVRPKRCIVEMKEEEFSYNPEDGLLTIKLGEGNSRDIEFVY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2305 398 Pfam Raffinose synthase or seed imbibition protein Sip1 1 385 IPR008811 -
Ssu1g2305 398 PANTHER - 1 398 IPR008811 -
Ssu1g2305 398 SUPERFAMILY (Trans)glycosidases 7 176 IPR017853 -
Ssu1g2305 398 PANTHER OS04G0481100 PROTEIN 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2305 Ssu-Chr1 64986078 64987883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2305 1 387 Glycoside Hydrolase AT1G55740 53.453 5.53e-139 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2305 - - pvu:PHAVU_009G171600g 741.495