Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2300 ATGATCAGTATCCTATTTTTCTTGGTTTGTTTTGGATTCAGCGATGGTGCCAATGTGGGATCCTCTGAAGGGAGGAAAGGGCAGTGGCAACTGCTCCTTAACAGCACTGGCGTGGTTGGCATGCACATGGCTTTAACCTACAGAAACACAGTCATAATGTTTGATCAAACCGGGGCTGGCCAATCTAGTTACCAACTTCGCCGACGCTCCAATGGAAGCAGGTGCACCAGAAGCAACCATGATTTGATGGACTCATCATGCTATGCTCATTCTGTGGAGTATGACATTAGTGCCAACAAAGTGAGGCCTTTGAGGCTTGACACTGATCCTTGGTGCTCCTCTGCTTCATTCCTAAGCAATGGCACACTTTTACAAACAGGTGGAAATGGAAACGGTGCCAAAAGGGTCAGACTCTATAGGCCATGTGGGAATCACCAATGTGACTGGATACAGTCAAAGAAATCACTATCTGATGAGAGGTGGTATGCTTCTAGTCAGATACTACCAGAACATGATAGGGTGGTGGTTGTTGGTGGAAGAAGAGTTTTCACATATGAATTTGTACCAAAAATTAGCCCTGGAGAAAAATCCTTTGACCTTCCATTCTTGCACCAAACCAATGACAGGAATGCAGGAGGGAACAACCTCTATCCCTTCCTTCACCTTTCATCAGATGGAAACTTGTTCGTTTTCGCCAACCGGGATTCCATCCTACTCAACTGGAGAAGAAACAAAGTGGTCAAGTCCTTCCCTCGGATTCCGGGAAAAGGGTCAAGAAACTACCCAAGCTCTGGCTCATCTGCGTTGCTCCCATTAGACCATAGAGATAACTTCCAAAAGGTGGAAGTTATGGTGTGTGGGGGTTCCTCCACTGGAGCACTTAAAGCTGCTCGTAAGGGAAGATTCTTGGAAGGTTTAAGATCATGTGGAAGAATGGTGATCACAGGGAACAATCACAAGTGGGATATGGAGTACAGGCCCAAACCACGTCTCCTACATGACATGCTGATTCTTCCCAATGGTAATATCCTGATTATAAATGGGGCCAAAAAAGGCTGTGCAGGATATGACAATGCTAGAAACGCTTCTCTTGAACCTTATCTTTATAGCCCAAACAGAAGACTAGGGAAAAGGTTCACAGTCCTTAAGTCTACCAAGATAGCCAGAATGTATCACTCGTCAGCAACTCTTCTTCCTGATGGAAGGGTCTTGGTTGCGGGTGGTAACCCTCATGGGAGGTACACTTTTCACAATGTGGCATACCCAACTGAACTGAGACTTCAAGCATTTGTTCCACACTATATGGAAAGGAGGTACCATAACTTGAGGCCAAGTAACTTGACCATAGAATATGGTGGTGGCAGCCATGCAATTGGGTATGGCACAGAGTTTAGAGTTAGGTTCTTGCTGGGGAAGAGGCCTAGCAGTGAGGTGGGGTTCAGTGCCTATGCACCACCATTTACAACACATTCCTTTGCCATGAATCAGAGGATGCTGACGCTGAGGTGCAAGAGCTTGGTGAGAAGTGGTGGTGGGTGGGTGGTTGCAGTCTTAGAAGCCCCACCATCATCCCATGTTGCACCTTCTGGTTATTACTTGTTCACGGTTGTGAATGGCGGAATTCCAAGCATGTCTCAGTGGGTTCAGTTTGCACACGCCTAG 1662 0.4657 MISILFFLVCFGFSDGANVGSSEGRKGQWQLLLNSTGVVGMHMALTYRNTVIMFDQTGAGQSSYQLRRRSNGSRCTRSNHDLMDSSCYAHSVEYDISANKVRPLRLDTDPWCSSASFLSNGTLLQTGGNGNGAKRVRLYRPCGNHQCDWIQSKKSLSDERWYASSQILPEHDRVVVVGGRRVFTYEFVPKISPGEKSFDLPFLHQTNDRNAGGNNLYPFLHLSSDGNLFVFANRDSILLNWRRNKVVKSFPRIPGKGSRNYPSSGSSALLPLDHRDNFQKVEVMVCGGSSTGALKAARKGRFLEGLRSCGRMVITGNNHKWDMEYRPKPRLLHDMLILPNGNILIINGAKKGCAGYDNARNASLEPYLYSPNRRLGKRFTVLKSTKIARMYHSSATLLPDGRVLVAGGNPHGRYTFHNVAYPTELRLQAFVPHYMERRYHNLRPSNLTIEYGGGSHAIGYGTEFRVRFLLGKRPSSEVGFSAYAPPFTTHSFAMNQRMLTLRCKSLVRSGGGWVVAVLEAPPSSHVAPSGYYLFTVVNGGIPSMSQWVQFAHA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2300 553 Pfam Galactose oxidase-like, Early set domain 456 549 IPR015202 -
Ssu1g2300 553 SUPERFAMILY Galactose oxidase, central domain 92 435 IPR011043 -
Ssu1g2300 553 SUPERFAMILY E set domains 439 549 IPR014756 -
Ssu1g2300 553 Gene3D Immunoglobulins 448 553 IPR013783 -
Ssu1g2300 553 Gene3D - 23 441 IPR037293 -
Ssu1g2300 553 PANTHER ALDEHYDE OXIDASE GLOX-LIKE 13 552 - -
Ssu1g2300 553 CDD E_set_GO_C 439 549 IPR015202 -
Ssu1g2300 553 PANTHER SECRETED PROTEIN-RELATED 13 552 - -
Ssu1g2300 553 Pfam Glyoxal oxidase N-terminus 41 288 IPR009880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2300 Ssu-Chr1 64948695 64950356 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2300 - - gmx:100814200 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2300 1 64948695 64950356 Ssu1g2300 1 64948695 64950356 ECH