Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2299 ATGGGTGGATCAATTTCAAAATGGAAGAGTTCTAGGCAACGTTCGTCCTCAAGTTTTTTTCCTCAGTATCAATCACCTTATTTGCCACAACAAAGCCAAGATCATGGGTCTGTGGGGCATTACGGGTACTCATCTCAAAGCTATGGTGGTGATCGTGCTCCAGAACAAGGAAGGAGCTCAGATAGGAAGTATTCAAGGATAGGTGATAATTATAAGAGCTTGGACCagGTAACTGACGCTCTGGCAAGTGCTGGCCTGGAGTCTTCCAATCTCATTGTTGGTATTGATTTTACGAAGAGCAATGAGTGGACAGGTGGAAGGTCATTTCAAAGGAGATGCCTGCATCACATTGGTCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTATCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACACATGACCAggaagtttttagtttctatccTGATGAGAGGTTTTGTCATGGATTTGAAGAAGTGTTGGAGCGGTACAGGGAATTGGTCCCTCAATTAAAGCTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTCTTATTGATTATAGCCGATGGGCAGGTGACGAGAAGTGTTGACACCAAGTGTGGGCAGTTGAGTgcacaagaaaagaaaactgtAGAAGCTATTGTGAAAGCTAGTGACTATCCCTTGTCAATCGTATTAGTTGGAGTTGGAGATGGGCCATGGGATATGATGAAGGAATTTGATGATAACATCCCTGCCCGAACTTTTGATAATTTTCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAGCAGAGTTTGCACTCTCTGCCTTGATGGAAATGCCCTCCCAGTACAAGGCAACACTAGAGCTTAATATATTGGGTGCTTGTAGAGGGAAAGATATAGACCGGATTCCTCTACCACCGCCTCTATATGGTGCTGCTGCATCTTTCAACTCCCCCAAAACATCCAGTCAAAACAGTTTTCGTCCCAGTGCACCATCTCGCAGACATGATGTTAGCACGAACCCTCCTGCTAGTTCTGCTTCTGATAATCTGGTTTGTCCCATTTGCCTCACCAATCCTAAGGATATGGCCTTTGGTTGCGGGCATCAGACATGCAGTGAGTGCGGACCAGATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGATGCTAGAATAAAACTTTATTAG 1293 0.4238 MGGSISKWKSSRQRSSSSFFPQYQSPYLPQQSQDHGSVGHYGYSSQSYGGDRAPEQGRSSDRKYSRIGDNYKSLDQVTDALASAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCHGFEEVLERYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTKCGQLSAQEKKTVEAIVKASDYPLSIVLVGVGDGPWDMMKEFDDNIPARTFDNFQFVNFTEIMSKNMDRSRKEAEFALSALMEMPSQYKATLELNILGACRGKDIDRIPLPPPLYGAAASFNSPKTSSQNSFRPSAPSRRHDVSTNPPASSASDNLVCPICLTNPKDMAFGCGHQTCSECGPDLELCPICRSTIDARIKLY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2299 430 CDD RING-HC_RGLG_plant 386 430 IPR045317 GO:0061630|GO:0070534
Ssu1g2299 430 ProSiteProfiles Zinc finger RING-type profile. 387 420 IPR001841 -
Ssu1g2299 430 SUPERFAMILY RING/U-box 378 424 - -
Ssu1g2299 430 PANTHER RING-FINGER PROTEIN 1 430 - -
Ssu1g2299 430 SMART ring_2 387 419 IPR001841 -
Ssu1g2299 430 SMART VWA_4 88 291 IPR002035 -
Ssu1g2299 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 430 IPR013083 -
Ssu1g2299 430 MobiDBLite consensus disorder prediction 349 381 - -
Ssu1g2299 430 CDD vWA_copine_like 67 317 IPR010734 -
Ssu1g2299 430 MobiDBLite consensus disorder prediction 1 53 - -
Ssu1g2299 430 SUPERFAMILY vWA-like 89 272 IPR036465 -
Ssu1g2299 430 MobiDBLite consensus disorder prediction 348 381 - -
Ssu1g2299 430 PANTHER COPINE FAMILY PROTEIN 1 1 430 - -
Ssu1g2299 430 MobiDBLite consensus disorder prediction 1 66 - -
Ssu1g2299 430 Pfam Copine 113 326 IPR010734 -
Ssu1g2299 430 Pfam Zinc finger, C3HC4 type (RING finger) 384 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2299 Ssu-Chr1 64938112 64941602 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2299 K16280 - gmx:100809850 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2299 1 64938112 64941602 Ssu1g2299 1 64938112 64941602 ECH