Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2279 ATGGAAGTTCCAGCATCTCTTAGACTAAATGGACACGTGGTGGCCATGCCATACCCAAGTCGAGGACACGTCAACTCCATGATGAGCCTCTGTAAACTACTCGCAGCATCATCTTCAACAAGCGAAACTTCTCTCCTCATCACCTTCGTGGTCACCCAAGAGTGGCTCGGCTTCATCGGCTCCGAGCCTAAGCCGAGCAACTTTCGCTTCGCCACCATCCCTAACGTTATCCCTCTCCAATCTCAGATAGCCTCTGATATTCCTGCTTTCTTCAAAGCCGTTGTCACCAACATGGAGGCTCCCTTTGACCACCTCCTCCACCGCCTTCACCCTTCCGTCACCGCCCTCGTCGCCGACGTCGAGTTGCACTTTCCGATCGCCGTCGCCCGCCGCGGGAATATCCCGGTGGCGCTGCTTTGGACCATGTCAGCTTCCTTTTACCTCACATTACATCAACTAGGAAGCGTAGTTCGTAACCAATCTTTGAAGGCTGATCTTTTAGATGATTGTGAAGAACATATAGCAGGAATTTCTTCGGCACAATTAGCTGGTCTTCGAATAGTGCTTCGTGAAAATGACTTGAGGTTTTTGCAGCTTGAGTTGGAATGCACTTCAATAGTGCACAAAGCAGATTGTCTCATAGTTAATAGTGTTCAAGAGTTGGAGGCTGAAATAATTGATTCTTTGAGAGCTATGTTCCACTTTCCAATTTATCCCATTGCCTTTCCTTACTTCAAACCCGAAACAAGTCATTTAGTGGCCAACAATGATTACAACGTTGAGCACTTAAATTGGCTAGATTCTCAGCCACCTATGTCAGTATTGTACATTTCTCTTGGTAGTTTCCTTTCTGTGTCTTGTGCccaaatgaatgaaattgtttCAGCTTTAAACACGAGTGGTGTTTGTTACTTCTGGGTGGTTCGTGGAGAAGTTTCCTGGTTAAAAGAGAAATGTGGGGATAGGGGTTTAGTGGTGCCTTGGTGTGACCAATTGAAGGTTTTGTCACATCCTTCCGTAGGTGGGTTTTGGAGCCATTGTGGGTGGAATTCCACTCTAGAAGCTGTTTTTGCTGGTATTCCAATGCTGACGTTCCCTCTTTTCTTTGATCAAGTCCCAAATAGTAGGCAAATTTTGGAAGAGTGGAAGAATGGGTTGGAGTTAAAAAGATCAGAGTTGGGAAGTGAAGAATTAATGACACAAGAAGAAATAGTGAAAGTGATCACAGAGTTTATGGATCTTGGAAATTGGAAGGGTAAAGAAATCCGAGACAGGGCCCTAGAACTTAAGGGCATATGTGACCGAGCAGTTGCAGAAGGTGGATCCTCCAATATGAACCTGGATGCATTTATAAAAGACGTTTTGTGTGTTCAAGGTCATTGA 1383 0.4483 MEVPASLRLNGHVVAMPYPSRGHVNSMMSLCKLLAASSSTSETSLLITFVVTQEWLGFIGSEPKPSNFRFATIPNVIPLQSQIASDIPAFFKAVVTNMEAPFDHLLHRLHPSVTALVADVELHFPIAVARRGNIPVALLWTMSASFYLTLHQLGSVVRNQSLKADLLDDCEEHIAGISSAQLAGLRIVLRENDLRFLQLELECTSIVHKADCLIVNSVQELEAEIIDSLRAMFHFPIYPIAFPYFKPETSHLVANNDYNVEHLNWLDSQPPMSVLYISLGSFLSVSCAQMNEIVSALNTSGVCYFWVVRGEVSWLKEKCGDRGLVVPWCDQLKVLSHPSVGGFWSHCGWNSTLEAVFAGIPMLTFPLFFDQVPNSRQILEEWKNGLELKRSELGSEELMTQEEIVKVITEFMDLGNWKGKEIRDRALELKGICDRAVAEGGSSNMNLDAFIKDVLCVQGH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2279 460 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 202 401 IPR002213 GO:0008194
Ssu1g2279 460 CDD GT1_Gtf-like 12 444 IPR002213 GO:0008194
Ssu1g2279 460 Gene3D Glycogen Phosphorylase B; 251 435 - -
Ssu1g2279 460 PANTHER GLYCOSYLTRANSFERASE 8 454 - -
Ssu1g2279 460 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 11 454 - -
Ssu1g2279 460 Gene3D Glycogen Phosphorylase B; 16 447 - -
Ssu1g2279 460 PANTHER UDP-GLYCOSYLTRANSFERASE 87A1-LIKE 8 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2279 Ssu-Chr1 64469449 64471494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2279 12 454 Glycosyltransferase AT2G30150 44.176 4.64e-123 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2279 - - vun:114196047 724.546