Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2277 ATGTTGAGGCTTTACGTGTGTGTATTGGAAGCCAAGGACCTACCCGTGAAGGATACCTACGTGAAGCTTAGGCTCGGCAAGTTCAAGTCCAAGACAAGGATATTGAGGAACACGTGCACCCCCGTTTGGAACGAGGAGTTTGGTTTCAGGGTGCATGACGCAGAGGACGTGCTTGTTGTCTCTGTTGTTAATGATAATAACGAGTGCAGTGTGACCAATGGTTACGCGGATTTCGTGAGTGAGGTACGGATTCCAGTAGGCTCAGTTGCTTTTGAGGATAAGCAAACCTTGCTGCCCACGTGGTTCTCTCTTGAAAGCCCCAAGAGtggaaaatttttcaaaaaatattgtgGGAAAATTCTCCTCACAGTTTCTCTGCACGGTAAAGGCCGTGCTTCTTTCATCAATCATAAGCATTCTCCAAATTCATCTACTGAGGACTCGAAAGACTTGGAGGGTCTGCACATTTCATCTGAGGCACCTTGTGGTAAAATGGGTGTGGGCAAACAATTGTTGAAGGTTATTGCTAATCGTTTGCATAGGATTTTCAATAAGAAAGAAGGAAGCTCAAAACCTGGGGATTCTTCAGAACCATCCACTTCATTATCTGATTATGAAGATAGTGTGCAGGAAAATTCATCTCCTTGTAGCTTTGAAGAAGCCATTGCACTAATGGAGTCAGGAGATAACAAACCAGAAATGCCGGAAAATTTGCCAGCCGGTGTTCTAGTAGATCAGATTTATTTAGTCTCTCCAAACGACCTTAATGTGTTTCTTTTTGCACCCAATTCACAGTTTGGGAAAGATTTGGCTGAACTGCAGGGAACAACAAATGTGCAAGAGGGGCCTTGGGCGTGGAAACAAGGAGACATGTCAGGTTTAACACGAGTTGTTTCATATACAAAAGCTGCTACAAAATTGATTAAGGCAGTTAATGCCATTGAGGAGCAAACCTACATTAGAGTGAGTAGAAAGGAATTTGCTATACTTGTTAGTGTAAGCACACCTGAGGTCCCATATGGGAATACATTTAGGACTGAATTGCTTTACAAGATAATGCCCGGACGAGAGGTATCTTCTGGAGAGGAATCCTCTCATCTTGTTGTATCCTGGGGAATTGTCTTCCTCCAAAGCACAATGATGAAAGGCATGATAGAAGGTGGGGCAAGACAGGGATTGAAGGAGAGTTTTAACCAGTTCTCGGACCAACTTGCGCAGAATTTTAAGGTGCTAGATAAGGCAGATTTACCAGGCAAGGAGCATTTGTTGGCAACTTTGCAAACGGAAGACCAGTGGAATTGGTGGCAGGCAATTACATACTTTTGGAATTTCACTGTGATTTCCaccatttttatgtttttgtatgtgTTGGTGCATATTTTACAGTGTGGTCCAAGTCTACCTCAGGGCTTGGAATTTAGTGGCCTTGAATTGCCAGATAGTTTTGGAGAGCTCATTACAAGTGGAATTTTAATCATCCAGTTACAGCGTGTTTATAATATGGTGTCTCACTTTGTGCAAGCTAGATTTCAGATGGGAACTGACCATGGCCTCAAAGCTCATGGTGATGGATGGGTTCTTACTGTGGCTTTAATTGAGGGGTTTGACCTGGCCTCCTTAGAGTCAGAAGGGTTGTCAGATCCCTATGTAGTTTTCACCTGCAATGGACAAACAAGGTCAAGCTCTGTCAAGCTTCAAACGTCCGATCCTCAATGGAATGAGATACTAGAGTTTGATGCTATGGAAGAACCACCATCAGTTTTAGATGTGGAGGTTTTTGATTTTGATGGTCCATTTGATCAGGATGTTTCACTTGGACATGCTGAGATTAATTTCCTAAAGCACACATCAACAGAGTTGGCGGACACGTGGCTCATGCTCGAAGGAAAGCTTGCTCAATCTTCTCAGTCAAAGTTGCACTTGAGAATTTTCTTGGACAATAATAAAGGAGTTGAAACAATCAAGGAATATTTGGAGAAGATGGAAAAGGAAGTAGGCAAAAAATTGAATCTTAGATCACCTCAAAGGAATTCTACATTCCAGAAATTGTTTGGGTTGCCTCCGGAAGAATTTCTCATCAAAGATTTCACTTGTTACCTGAAGAGAAAAATGCCTTTACAGGGTCGGCTGTTTCTTTCAGCAAGGACTCTGGGGTTTTACGCCAATTTGTTTGGacataaaaccaattttttcttcctttgggAAGATATTGAAGAAATACAAGTACTTCCTCCATCATTGGCATCATTAGGAAGCCCTACGTTGGTCATAATTCTGCGAAGAGGTCGAGGTCTTGACGCAAGGCATGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTGTTTCATTTAGCGTTGCCTCCAGaaCAATAAAGGCCTTGTGGAGAACAAGAATACTGAACCCCTATCAGAAAGAACAAATTACAGAAGAGCATGACGATCAAGAAGGCTTTGTAATTCCAGAAGACTCTGCATCTATCTTAGAGGATGAAGAAAAAATGATCAGAATTTTCTCTGCAGAACTTCCAATTACGATGAGGTCAGTGATGGGAATTTTTGATGGAGGAAACCTGGAGCATAAAATTATGCATGGAACAGGATGCATGAATTATGAAACTACATCATGGGAACTAGTAAAGCCTGATGTCTTTGAGAGGCGTGTTTCCTACCAATTCAATCGACACGTGTCAGCTTTTGGAGGTGAAGTCACATGCACACAACAAAAATTTCCAAATGCAAACACTGGAGGTTGGACTGTGATTGAAGTTATGGCTCTTCACGGTGTCCTATTTGCTGATCACTTCCGTATTCATTTTAGGTACGAAATTGAGAAATCCTCTCTCGGTGACTGTGCTTGCAAATGTGGTGCTTACATTGATATTGTGTGGCTTAAGAGCTCTAAATTTCAGCAGAGGATCAACCGGAACATAATAGCCAAGTTTAACCTTCGATTGAAGGAAACATTTGAACTGGTTCAGAAAGAGATTTTGTTAATATCTCAGAACTCACATGAATAA 3036 0.4097 MLRLYVCVLEAKDLPVKDTYVKLRLGKFKSKTRILRNTCTPVWNEEFGFRVHDAEDVLVVSVVNDNNECSVTNGYADFVSEVRIPVGSVAFEDKQTLLPTWFSLESPKSGKFFKKYCGKILLTVSLHGKGRASFINHKHSPNSSTEDSKDLEGLHISSEAPCGKMGVGKQLLKVIANRLHRIFNKKEGSSKPGDSSEPSTSLSDYEDSVQENSSPCSFEEAIALMESGDNKPEMPENLPAGVLVDQIYLVSPNDLNVFLFAPNSQFGKDLAELQGTTNVQEGPWAWKQGDMSGLTRVVSYTKAATKLIKAVNAIEEQTYIRVSRKEFAILVSVSTPEVPYGNTFRTELLYKIMPGREVSSGEESSHLVVSWGIVFLQSTMMKGMIEGGARQGLKESFNQFSDQLAQNFKVLDKADLPGKEHLLATLQTEDQWNWWQAITYFWNFTVISTIFMFLYVLVHILQCGPSLPQGLEFSGLELPDSFGELITSGILIIQLQRVYNMVSHFVQARFQMGTDHGLKAHGDGWVLTVALIEGFDLASLESEGLSDPYVVFTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVLDVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADTWLMLEGKLAQSSQSKLHLRIFLDNNKGVETIKEYLEKMEKEVGKKLNLRSPQRNSTFQKLFGLPPEEFLIKDFTCYLKRKMPLQGRLFLSARTLGFYANLFGHKTNFFFLWEDIEEIQVLPPSLASLGSPTLVIILRRGRGLDARHGAKTQDEEGRLRFHFQSFVSFSVASRTIKALWRTRILNPYQKEQITEEHDDQEGFVIPEDSASILEDEEKMIRIFSAELPITMRSVMGIFDGGNLEHKIMHGTGCMNYETTSWELVKPDVFERRVSYQFNRHVSAFGGEVTCTQQKFPNANTGGWTVIEVMALHGVLFADHFRIHFRYEIEKSSLGDCACKCGAYIDIVWLKSSKFQQRINRNIIAKFNLRLKETFELVQKEILLISQNSHE 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2277 1011 ProSiteProfiles C2 domain profile. 506 625 IPR000008 -
Ssu1g2277 1011 SMART C2_3c 526 625 IPR000008 -
Ssu1g2277 1011 SMART C2_3c 3 98 IPR000008 -
Ssu1g2277 1011 SMART gram2001c 678 744 IPR004182 -
Ssu1g2277 1011 Pfam GRAM domain 679 752 IPR004182 -
Ssu1g2277 1011 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 2 1008 - -
Ssu1g2277 1011 Gene3D C2 domain 509 645 IPR035892 -
Ssu1g2277 1011 ProSiteProfiles VASt domain profile. 839 1002 IPR031968 -
Ssu1g2277 1011 PANTHER BNAA05G37250D PROTEIN 2 1008 IPR044511 -
Ssu1g2277 1011 MobiDBLite consensus disorder prediction 185 212 - -
Ssu1g2277 1011 CDD C2 527 627 - -
Ssu1g2277 1011 ProSiteProfiles C2 domain profile. 1 102 IPR000008 -
Ssu1g2277 1011 CDD C2 4 104 - -
Ssu1g2277 1011 Pfam C2 domain 3 104 IPR000008 -
Ssu1g2277 1011 Pfam C2 domain 526 625 IPR000008 -
Ssu1g2277 1011 Gene3D - 676 803 IPR011993 -
Ssu1g2277 1011 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 129 IPR035892 -
Ssu1g2277 1011 Gene3D C2 domain 2 153 IPR035892 -
Ssu1g2277 1011 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 525 649 IPR035892 -
Ssu1g2277 1011 MobiDBLite consensus disorder prediction 193 212 - -
Ssu1g2277 1011 ProSiteProfiles VASt domain profile. 239 412 IPR031968 -
Ssu1g2277 1011 Pfam VAD1 Analog of StAR-related lipid transfer domain 243 392 IPR031968 -
Ssu1g2277 1011 Pfam VAD1 Analog of StAR-related lipid transfer domain 843 984 IPR031968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2277 Ssu-Chr1 64451241 64455650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2277 1 140 Lipid Metabolism Gene Families AT1G22610 31.081 2.63e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2277 - - gmx:100811103 1811.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2277 1 64451241 64455650 Ssu1g2277 1 64451241 64455650 ECH