Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2267 ATGTTGATTCGGTTTGAATGGCTCCATTCCGAACTCAGCAACATTTGTAGGTCCCTCTTGAGGGTGAAGCAGTTACACGCATTTCTTTTGAAGACCCATCTCTCACAAGACCCCTTTTATGCAACGAAAATTGTTAGGTTGTATGTGGCCAACAACGACATTAACTCTGCCCACCATGTGTTCGACGAAACTTCCACCCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTTTCGCAAAGTCCCAAAGATTTTTCAATGCTATCTCTCTGTTTAGAAGCATGCTTGGGACTGACATAAGTCCTGACAGCCATACTTATGCTTGTGTTATACGTGCGTGTGCTGAAAACTATGATTTTGGCATGCTAAGACTTGTTCATGGAGGTGCTGTGGCTGCAGGGTTAGGACTGGACCCTATTTGCTGCAGTGCACTTGTGGCTGCTTATTCAAAACTAGGCCTTGTTCATGAAGCGCATAGAGTGTTCGATGGGATCACTGAACCAGATTTAGTTTTGTGGAATTCGTTGATTTCTGGTTATGGGGGCTTTGGTCTGTGGGGTGTGGGGCTGCAGATGTTTAGTGCGATGAGACTTGTTGGGAAGAAGCCTGACGGATATACACTGGCTGGGTTGCTTGTGGGTATTTTGGATTCTGGGGTGCTGAGCATTGGCCAAGGATTACATTGTTTGAGTCAAAAGAGTGGGCTTGATTCTGATTCTTATGTTGGTTGTTTGCTGGTGAGTATGTACTCGAGATGTAAGTGCATGGCTTCGGCGTATAGAGTCTTTTACAGTGTTTTCAATCCTGATTTGGTCACATGGTCTGCTCTTATAGTGGGGTATTCTCAGGCTGGGGACTATGAGAAGGTGCTGCACTTTTTCAGGAAATTAAACATGGAAGACAAGAAGCCAGATTCTGTTTTGATTGCCAGTGTATTGGCTTCTATTGCTCAGACAGCGAATGTAGGACTCGGATGTGAGGTTCATGGTTATGCTCTTCGACATGGATTGGAATTAGATGTTAGGGTGTCCTCTGCTCTTGTAGACATGTATTCAAAGTGTGGTTTCTTGCATTTGGGAATTTGTGTTTTCAGGATAATGCCAGAACGGAATATTGTTTCTTATAATTCAGTAATTTTGGGTTTTGGCTTGCATGGGTGTGCTTCCGAGGCTTTCAGGATGTTTGATAAGATGCTGGAGAAAGGATTGGTACCTGATGAAGCCACATTCTCTTCTCTCCTATGTGCCTGTTGTCACGCTGGCCTTGTCAAAGATGGACGGGAGATTTTCTGGAGAATGAAAGAGGAATTTAACATCAAAGCTGGGCCTGAGCACCATGTTTACATGGTGAAGCTTCTTGGCAGTGCTGGGGAGTTGGAAGAGGCTTACAATCTGATCCGGTCCTTACCAGAACCTGTAGACAAGGCTATCCTGGGAGCCTTATTATCATGCTGTAAATCTTGTGGAAATTCTGAGCTGGCAGAAACTGTAGCACATCAGCTTTTTGAAAGTAATCCTGCTGACAATGTTTACAGGATTATGCTTTCTAACATATATGCTGGTGATGGGAGGTGGGGTGATGTGAAGAAGTTGAGGGATAAAATGACAGGAGGTCTGAGAAAAATGCCCGGACTAAGCTGGATTGAAGGCAGTTAG 1656 0.4444 MLIRFEWLHSELSNICRSLLRVKQLHAFLLKTHLSQDPFYATKIVRLYVANNDINSAHHVFDETSTRSVYLWNSMIRAFAKSQRFFNAISLFRSMLGTDISPDSHTYACVIRACAENYDFGMLRLVHGGAVAAGLGLDPICCSALVAAYSKLGLVHEAHRVFDGITEPDLVLWNSLISGYGGFGLWGVGLQMFSAMRLVGKKPDGYTLAGLLVGILDSGVLSIGQGLHCLSQKSGLDSDSYVGCLLVSMYSRCKCMASAYRVFYSVFNPDLVTWSALIVGYSQAGDYEKVLHFFRKLNMEDKKPDSVLIASVLASIAQTANVGLGCEVHGYALRHGLELDVRVSSALVDMYSKCGFLHLGICVFRIMPERNIVSYNSVILGFGLHGCASEAFRMFDKMLEKGLVPDEATFSSLLCACCHAGLVKDGREIFWRMKEEFNIKAGPEHHVYMVKLLGSAGELEEAYNLIRSLPEPVDKAILGALLSCCKSCGNSELAETVAHQLFESNPADNVYRIMLSNIYAGDGRWGDVKKLRDKMTGGLRKMPGLSWIEGS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2267 551 PANTHER OS01G0545900 PROTEIN 5 548 - -
Ssu1g2267 551 Gene3D Tetratricopeptide repeat domain 388 551 IPR011990 GO:0005515
Ssu1g2267 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Ssu1g2267 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Ssu1g2267 551 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 548 - -
Ssu1g2267 551 Pfam PPR repeat 272 297 IPR002885 -
Ssu1g2267 551 Pfam PPR repeat 141 163 IPR002885 -
Ssu1g2267 551 Pfam PPR repeat 171 197 IPR002885 -
Ssu1g2267 551 Pfam E motif 490 549 IPR046848 -
Ssu1g2267 551 Gene3D Tetratricopeptide repeat domain 224 370 IPR011990 GO:0005515
Ssu1g2267 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Ssu1g2267 551 Gene3D Tetratricopeptide repeat domain 125 223 IPR011990 GO:0005515
Ssu1g2267 551 Gene3D Tetratricopeptide repeat domain 10 124 IPR011990 GO:0005515
Ssu1g2267 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Ssu1g2267 551 Pfam PPR repeat family 68 115 IPR002885 -
Ssu1g2267 551 Pfam PPR repeat family 370 419 IPR002885 -
Ssu1g2267 551 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Ssu1g2267 551 TIGRFAM PPR: pentatricopeptide repeat domain 409 436 IPR002885 -
Ssu1g2267 551 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Ssu1g2267 551 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
Ssu1g2267 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2267 Ssu-Chr1 64230623 64232278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2267 28 549 Glycoside Hydrolase AT3G49170 30.943 1.93e-76 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2267 - - gmx:100820049 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2267 1 64230623 64232278 Ssu1g2267 1 64230623 64232278 ECH