Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2260 ATGGCTTCCCCTACTCATTTCGATGATGACTTCGATTTCGGAGGCGGATTTGGCGGAAGGCATTCAGGTAATAAGAGGTCGTCTCCCGATTACGACGATGAGGATTACGACAACGATCCTTTTGCGCCGAAGAAGGCTAAATCAAAAGCTGAAGAAGCCTCTGGTGTAACAACAGGAATGATCTTGTCACTTCGTGAGAGTCTTCAGAACTGTAGGGATACCCTTGCGACATGCCAATCTGCTGTGCGGGATCTGAAAGTGCAACTCAAACCACCATCAATGCTGGCTAGGAGGTTGTTACTAGATCCAGCTGTTCATGAAGAGTTCACACGTTTAAAGAATTTAGTTgaggaaaaggataaaaaagtaAAGGAGTTGCAAGATAATATTGCTGCTGTAAGTTTTACTCCCCAAAGCAAGATGGGGAAGATGCTGATGGCTAAATGTAGAACCCTGCAGGAGGAAAATGAGGAGATTGGAAATCAAGCTTCTGAGGGAAAGATGCATGAATTAGCTATGAAACTTGCATTGCAGAAGTCCCAGAATTCACAACTTAGAAGTCAATTTGAAGGGTTGCAGAAGCACATGGAAGGACTGACAAATGATGTGGAAAGATCCAATGAAACGGTTCTTATGTTACAAGATAAATTAGAAGAGAAGGATCAGGAGATCCAAAGACTCGAATATGAGCTTCAACAGAAAAACTTGGAGGATGGAAGGTCAGATGCAGCATTTAACAGAAATGACAATAATGAGACGATAGCCGGGGAGGCTACTAACTAA 783 0.4202 MASPTHFDDDFDFGGGFGGRHSGNKRSSPDYDDEDYDNDPFAPKKAKSKAEEASGVTTGMILSLRESLQNCRDTLATCQSAVRDLKVQLKPPSMLARRLLLDPAVHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPQSKMGKMLMAKCRTLQEENEEIGNQASEGKMHELAMKLALQKSQNSQLRSQFEGLQKHMEGLTNDVERSNETVLMLQDKLEEKDQEIQRLEYELQQKNLEDGRSDAAFNRNDNNETIAGEATN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2260 260 MobiDBLite consensus disorder prediction 1 56 - -
Ssu1g2260 260 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 1 80 - -
Ssu1g2260 260 Pfam WTAP/Mum2p family 74 210 IPR033757 GO:0000381|GO:0005634|GO:0080009
Ssu1g2260 260 MobiDBLite consensus disorder prediction 246 260 - -
Ssu1g2260 260 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 79 245 - -
Ssu1g2260 260 MobiDBLite consensus disorder prediction 25 51 - -
Ssu1g2260 260 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 1 80 IPR033757 GO:0000381|GO:0005634|GO:0080009
Ssu1g2260 260 Coils Coil 182 237 - -
Ssu1g2260 260 MobiDBLite consensus disorder prediction 235 260 - -
Ssu1g2260 260 Coils Coil 109 129 - -
Ssu1g2260 260 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 79 245 IPR033757 GO:0000381|GO:0005634|GO:0080009
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2260 Ssu-Chr1 64089410 64097732 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2260 K22824 - gmx:100800842 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2260 1 64089410 64097732 Ssu1g2260 1 64089410 64097732 ECH