Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2247 ATGACCGCGACGACAACGACACACTCAAAACCCAACTTTTGCTTTCTTCGTCAAGGTTCAAAACAAGTGGAGTCTCCGCCCCAGCGAGACGAGAATGAGACTGTGTGCGACGTCGTCGTTTTAGCACCAGCCATGACTGACTCTGGTTCTGCTGCTCCTCTCCATTGGAAGTTCTCTCAGGTACTCGGCCAACGACTTCCCAACGAGCCTCTCCAAAACAACGACATCATAACCACCGTTGCGTTCGAGAAGCGCGGCGATTATCTCGCCGTTGGCGATCGAGGTGGGCGCGTTATAATATTCGAACGCGACGATCGAAAAAAGAATGCTTCGAATAATCGAAGAGATTTGGAGAAGCTCGATTTCGCGACTTCGCGGCATCCCGAATTCCGTTACAAGACGGAATTTCAGAGCCACGAGCCCGAGTTTGATTACTTAAAGAGTGTGGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGACCCACGACGGTTTGTTATTTATTCTTTCAGCCAACgacaaaacaattaaattgtGGAAGGTTAAGGAACATAAGGTGAAACAAGTTAAAGAAATGGCCCCTCCTTTGTGCTCAGAAAATATGCTTTTGGCTGAAAGGAGTTTCATACAGGGGCTGGAAACCAAGTCTGCCACTAATGGCTATCGTTTGGAATGGATAGAGAAGACACATCAGAATCTTTTGCCGTCTCAAGACATTGATGGCGAGATTGGTGGAATGGAAGACCCTGTTCGTGCAAAGTGCCAAAAGGTGTATGCTTATGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTTGTCTCGGCAGACGACCTCAGAATCAATTTGTGGAATCTTGAGGTCAGTGATCAGTGTTTCAATATTATTGACATGAAGCCGTCAAACATGGAGGATCTTACCGAGGTTATAACATCAGCTGAATTCCATCCTTTACATTGTAACCTCCTGGCATATAGCAGCTCACAAGGTTTTATTCGTCTATCTGATTTGCGGCTTGCGGCAATATGTGACCATGCTTCTAGAACATTTCAACATGGAGAGTGTTATGGATCAAAGTCTTTTTTAACAGAAATCACTTCGTCCATCTCAGacataaagtttttaaatgatgGCCAGCATCTTATAAGTCGCAGTTACATGAATATGAAGCTTTGGGACATGCGTATGGAGTCATCTCCGGTTGCAATATTCAAAATTCATGAGCATCTGCGTCCCAAGTTGCCAGAGTTATATAATAATGACTgcatatttgataaatttgagTGCTGCTTTAGTGGTGATGGACTTCATTTTGCAACTGGTTCTTATAGCAATCTCTTGCGGATATTCTCCCCGGGTACTGGAAGGGAGGAAGGGGTCAAACTAGAAATTAGAGCAAATTCTGACAGGAAGGGTCTTCACCAAGCTACATCAAGGGTTAGAAGGTCTTCTCTAAGCAACCTAATACCTCGTGGAATTTACCAGCATGCTCTCACCGACTCACGGTCTAGTAGAGCTGACTTTACTTGTAACTTAAGCTCCAAACTGCTACATGTAGCATGGCATCCTACATGCAATCTAGTTGCATGTGCTGCTGAAAGCAGCCTAGTATTGTATTATGCGTAG 1647 0.4293 MTATTTTHSKPNFCFLRQGSKQVESPPQRDENETVCDVVVLAPAMTDSGSAAPLHWKFSQVLGQRLPNEPLQNNDIITTVAFEKRGDYLAVGDRGGRVIIFERDDRKKNASNNRRDLEKLDFATSRHPEFRYKTEFQSHEPEFDYLKSVEIEEKINKVRWWMTHDGLLFILSANDKTIKLWKVKEHKVKQVKEMAPPLCSENMLLAERSFIQGLETKSATNGYRLEWIEKTHQNLLPSQDIDGEIGGMEDPVRAKCQKVYAYAHSFNINSISNNSDYETFVSADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITSAEFHPLHCNLLAYSSSQGFIRLSDLRLAAICDHASRTFQHGECYGSKSFLTEITSSISDIKFLNDGQHLISRSYMNMKLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNLLRIFSPGTGREEGVKLEIRANSDRKGLHQATSRVRRSSLSNLIPRGIYQHALTDSRSSRADFTCNLSSKLLHVAWHPTCNLVACAAESSLVLYYA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2247 548 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 51 548 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 SUPERFAMILY WD40 repeat-like 72 545 IPR036322 GO:0005515
Ssu1g2247 548 Gene3D - 56 214 IPR015943 GO:0005515
Ssu1g2247 548 Pfam WD domain, G-beta repeat 255 292 IPR001680 GO:0005515
Ssu1g2247 548 Gene3D - 250 354 IPR015943 GO:0005515
Ssu1g2247 548 SMART WD40_4 508 548 IPR001680 GO:0005515
Ssu1g2247 548 SMART WD40_4 253 292 IPR001680 GO:0005515
Ssu1g2247 548 SMART WD40_4 365 400 IPR001680 GO:0005515
Ssu1g2247 548 SMART WD40_4 142 182 IPR001680 GO:0005515
Ssu1g2247 548 SMART WD40_4 67 102 IPR001680 GO:0005515
Ssu1g2247 548 SMART WD40_4 404 458 IPR001680 GO:0005515
Ssu1g2247 548 SMART WD40_4 296 343 IPR001680 GO:0005515
Ssu1g2247 548 PIRSF PPA2_B55 45 548 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PANTHER OS02G0617600 PROTEIN 51 548 - -
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 264 291 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 517 546 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 349 376 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 377 404 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 431 457 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 158 186 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 292 319 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 81 101 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 405 430 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 348 IPR000009 GO:0000159|GO:0019888
Ssu1g2247 548 Gene3D - 355 547 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2247 Ssu-Chr1 63710573 63718076 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2247 K04354 - gmx:100795137 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2247 1 63710573 63718076 Ssu1g2247 1 63710573 63718076 ECH