Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2219 ATGTCTGGGGAGACCACAAATTTATTGCCCCCGGCCCCAATCGATCAATGGtccctctctttttcttcttctatatcaCTATCTAGTTCCTCCTCACTGCGCACGCAACACGCTCACCACTTCAAAATGAGTATTCACTTCTTCTGCTTGTTCTTGTCACTCTCATCTTTCCATGTTTCTCTAGCAATTAAGGGAATGCCTCTGCCTCAAACACATGAACATTCGAAACAGATCAACATCAACCCTTTCAGCCCCAAAGCCTCTCTCATTCGCTATTGGAACGCTCGCGTCTCCAACAAGCTTCCAATCCCTCACTTCCTTCTCTCGAAAGCTTCCCCTCTCACACCACACCACTACGCCATCCTCAGCAACCTCCTCAACCAAAAACCCAAACCCTTCACTCCGAAGCTTCGTCATTCCCTATGCTCCTCACCCAACTTATTCTGCTCCTTCGACGACACACCGACAAACACACTCCAACGCGAAAACGACGACCCCAACTTCGCCGTTTACAACAACAAACGCTTCGCCAACTACGGCTCCTCCCGAGTCGGCGGAGCCGACTCGTTCAAAAACTACTCCAACGGCCTAAACGCGAACAACGACGCGTTTAGAAGATACAGCGCCGCCTCAACGCGCCACAGTGGCCAGTTCAAGAACTACGCCGAAAACGGCAACGTCGCGAACACGAACTTCACCAGCTACGGTTCCGGCGCGGCTGAAACCTCCACCGAGTTCAACAACTACGACAAAACCGACAACGTTCCCAACCTCGCATTCACGACCTACGACTCCGGCGCCACCAACCACAAACTCTCGTTCACAAGCTACGGCAACGAGACAAACTCTGGCTCACAATCTTTCAAGAGCTACGGAAAGCGCGTTCGCGGCGGAACCAGCGAGTTCGAGAATTACGCCGGCGACGCGAACATTCTGCAATCGGAGTTCAACAACTACGGCGACTTCAGCACCGGAGTGACCAACGACTCCTTCAAGTTCTACAGCTTCTCCGGCAACAATCCGCGGAACGTTTTCAAAACCTACGCCGCCGGATCCGCGGCCGGCGTGGACAGTTTCCTCAGTTACCGGAACCGCGCCAACGTCGGCGACGACTCGTTCCAAAGCTACGCCGCGAGGTCGAAATCCGGCGCCGCCACGTTCGCGAACTACGGCCAGTCGTTCAACGTCGGAAACGACAGTTTCGCGGAGTACGGAAAGGGAGCGTCGGGAAAAACGTCGTTCGGGTTTAAATCGTACGGTCTGGGCCGCGCGTTTGAAGTGTACAACAAAGACGGCGCGTCGTTTTCTGAGTATCGCAATTTCAGCGCGTTGAGTGGCAAAACTGTAAATAAGTGGGTCGAGCAGGGTAAGTTTTTTAGAGAATCCATGATTAAGGAAGGGAACGTGATGGTGATGCCTGATATTAAAGATAAGATGCCCACAAGGTCGTTTTTGCCCCTGGCTATTGCGTCGAAATTACCGTTCTCGTCATCGAGGATTGAGGAAATGAGGGAAGTGTTTCACGCGCGGGAGGGGTCGGTGACAGAGCGCGTGATGGTTAAGGCGTTAGGGGAGTGCGAGAGGGTGCCGAGCCGGGGCGAAACGAAACGGTGCGTTGCGTCCGCAGAGGGAATGATAGAGTTTGCGGTATCAGTGCTGGGTCCCATGGTGGTGGTGAGGACCACTGAGAATGTGAATGGGTCAGGATCGAGTGTGATGATTGGAAGAGTCTACGCCGTGGACGGTGGAAAAGTGACCAAGTCAGTTTCGTGTCATCAGAGTTTGTACCCTTACTTACTGTATTATTGCCACAGTGTACCCAAAGTGAGAGTGTATGGAGCTGATATTCTTGACGTGGACACCAAGGAGAAGATCAATCATGGGGTTGCCATCTGTCACCTGGACACGTCAGCGTGGGGCGCGGAACATGGGGCGTTCTTGGCTTTGGGTTCTGGCCCTGGAACAATTGAGGTGTGCCACTGGATTTTCGAGAACGACATGACCTGGACCACTGCCCATTGA 2022 0.5257 MSGETTNLLPPAPIDQWSLSFSSSISLSSSSSLRTQHAHHFKMSIHFFCLFLSLSSFHVSLAIKGMPLPQTHEHSKQININPFSPKASLIRYWNARVSNKLPIPHFLLSKASPLTPHHYAILSNLLNQKPKPFTPKLRHSLCSSPNLFCSFDDTPTNTLQRENDDPNFAVYNNKRFANYGSSRVGGADSFKNYSNGLNANNDAFRRYSAASTRHSGQFKNYAENGNVANTNFTSYGSGAAETSTEFNNYDKTDNVPNLAFTTYDSGATNHKLSFTSYGNETNSGSQSFKSYGKRVRGGTSEFENYAGDANILQSEFNNYGDFSTGVTNDSFKFYSFSGNNPRNVFKTYAAGSAAGVDSFLSYRNRANVGDDSFQSYAARSKSGAATFANYGQSFNVGNDSFAEYGKGASGKTSFGFKSYGLGRAFEVYNKDGASFSEYRNFSALSGKTVNKWVEQGKFFRESMIKEGNVMVMPDIKDKMPTRSFLPLAIASKLPFSSSRIEEMREVFHAREGSVTERVMVKALGECERVPSRGETKRCVASAEGMIEFAVSVLGPMVVVRTTENVNGSGSSVMIGRVYAVDGGKVTKSVSCHQSLYPYLLYYCHSVPKVRVYGADILDVDTKEKINHGVAICHLDTSAWGAEHGAFLALGSGPGTIEVCHWIFENDMTWTTAH 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2219 673 SMART BURP_2 456 672 IPR004873 -
Ssu1g2219 673 PANTHER POLYGALACTURONASE-1 NON-CATALYTIC SUBUNIT BETA 43 672 - -
Ssu1g2219 673 ProSiteProfiles BURP domain profile. 458 672 IPR004873 -
Ssu1g2219 673 Pfam BURP domain 458 670 IPR004873 -
Ssu1g2219 673 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 43 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2219 Ssu-Chr1 62988120 62990257 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2219 - - gmx:100787394 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2219 1 62988120 62990257 Ssu1g2219 1 62988120 62990257 ECH