Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2179 ATGGCTGGAGGAGGAAAGGTAAGGCTCGGTGAGAACACAGAAATGAGAGGAGAGGTGATTGAGAAGGCTTTTGGTTGGTCTATGAAGGCTCACAAGTCACCGGACAAGCCTTACCTTGTTGAAAAGATCAGAAGATACGACCCTCCCGAAGTTATCATCTGCTTTCCAGGATCCGGTGCTGTCAAGGATTGGTATTCTCAAAAGAACTTTGGGGAAACCAAAATAAACCTTGATCGTTTTGGCTCGCTCAGAAGCATCGGTAACGATGAAGCGGCTTTAGTGAATGAGGCTTTTCTGAAAAGATTCGAAGACATTTTGGTCAAACCATCGCTTGAAGCTGAGGTGGAGAATGCAATTAATAAAAAGAGGCAAATAGTGTTTGCAGGACACTCCTCTGGTGCTCCAGTGGCCATTCTGGCAACCCTCTGGGCCTTGGAAAAGTACCAAACTCCAAAATCCCACGGTGGCATCCCTCCCCTCTGTGTAACCTTTGGTTCTCCCTTAGTTGGGAATCACATATTTTCCCATGCCACAAGGCGAGAAAATTGGTCTCGCTACTTCGTTCATTATGTGATGAGATATGACATAGTGCCACGAATCCTCCTTGCCCCCCTCTCTTCCCTTGACCAAACATTTGAACCAATTTCACAGTCCTTCAACCCCAAATCCAGAACTTTCATGAGCGAATCAGTTGGAAGAGCCAGTGCAGCTGCAACTTCAGATTTCTACTTTGCCATAATGTCAAATGCTGCAACTGTCACAAGCCATGCTGCTAGTAAGTTAATGGGCAGCACAGACACCACATTGGACACTCTGGCAAATTTTATTCCCTTAAGCCCTTATAGACCCTTTGGGACTTATGTTTTCTGCACTGGAAATGGAAGGTTAGGGAAGCAAATTGTGATAAGAAACCCAGATGCAGTTCTGCAGGTCCTGTTTTTCTCTGCTCAGTTAAGCACTGAAGCAGAAGCTGCTCAAGTTCCCATAGAAGCCTACGAGATAATACGGTTTATGGCACCGAACTGCAACAAATGGGAACGCAGAATGTTGTGTACTTGGATCAACTCGAGAAGGTTCCTTTCTCTGAAGATGGTGCTGCTGCTGGCGGCTCTATTGCAACGATTAACACGGCCTTAA 1137 0.4591 MAGGGKVRLGENTEMRGEVIEKAFGWSMKAHKSPDKPYLVEKIRRYDPPEVIICFPGSGAVKDWYSQKNFGETKINLDRFGSLRSIGNDEAALVNEAFLKRFEDILVKPSLEAEVENAINKKRQIVFAGHSSGAPVAILATLWALEKYQTPKSHGGIPPLCVTFGSPLVGNHIFSHATRRENWSRYFVHYVMRYDIVPRILLAPLSSLDQTFEPISQSFNPKSRTFMSESVGRASAAATSDFYFAIMSNAATVTSHAASKLMGSTDTTLDTLANFIPLSPYRPFGTYVFCTGNGRLGKQIVIRNPDAVLQVLFFSAQLSTEAEAAQVPIEAYEIIRFMAPNCNKWERRMLCTWINSRRFLSLKMVLLLAALLQRLTRP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2179 378 PANTHER PROTEIN EDS1-RELATED 7 328 IPR044214 GO:0006952
Ssu1g2179 378 Gene3D alpha/beta hydrolase 29 244 IPR029058 -
Ssu1g2179 378 SUPERFAMILY alpha/beta-Hydrolases 46 204 IPR029058 -
Ssu1g2179 378 Pfam Lipase (class 3) 53 200 IPR002921 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2179 Ssu-Chr1 62078638 62080465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2179 95 201 Acyl Lipid Metabolism Gene Families AT3G07400 38.532 4.24e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2179 K18875 - gmx:100819703 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2179 1 62078638 62080465 Ssu1g2179 1 62078638 62080465 ECH