Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2157 ATGCCGAATATGTTACGAGCGAAGCAGATCAGTACTCTTTCAAGCAATGCTAGGAGTTTTTTCCTTAGTGGTTCGCGATGTAATGCAGCAGATGGCAATTCATGCACTTGCCCCGAGGATGAAACATGTGTGTCTAGAGGACGgcagagaaaaaataatgaagaattaCTTGTGCAGAAGCCATCCTCCTTAGTATCCAAAACCACATCTCAAGTTGCAGGAACACTGGTTTCAGGAAACTTGGCAAATGGGCCAGCTTCCCACAAGGCTGGGGTTGTTGATCAATCTGGTCGTGTACAACAAATTCGGTCTGCTTCATATGCACCAAGTAAATCAGACTCTGTAACATATGCTTGTGTTGTTGATGGTGGTCAGGAGCATGTTGCACACTCATCTTCTCTTAATGCTGACCAGTTTTATAGGGCTGGTATTGCAGCTGTCAATTTTCTTTCTGATGTAGTTAATTATAAGTTTCCTTTATCAGATGGCATGGGAATACTAAActactctaaaaattatatggTTGATCCTGCCAGAACCCTACCCAACGTCAGATCTTCCAATGTGCAGCAAATTAGAAAGGAGAACTTTACTGCCATTCATCCCAAACCACCTGTTTCTACTCATCCGGGGCCGTCTAAACATACAAATAATCATCATGCTGCAAAGGGAAAAGTTGATAAATCAAATTTAGCTAAAGGCTTTAAGCATGTTGCTTCTTCAGGGACAGAGAAGTCAGGGGCAGCTCCAAATATTCCTTTAAATAATCATGATCGCAGAGCCTTGCCACAGAGAACAAGAACTCATTCAAACCGCTTTGTGACAAATTTTGGTTCCAATGTGCAAACTTCAAATCCACGCATGTTGGGATCATTCAAGGAAAGTTTCAATAAACACCCAAGGGATCTGAATATGCCCGCTGGAATTGCTCCAATGAACAGGCATTTTACTAATACTGGGCATGTTGTGGAAGTGGTTAAAGATATACTGAAACAGTTAAAATGGGGTCCTGCTACAGAGAAGGCTCTCTATAACCTGAATTTTTCAATCGATGCATACCAAGCTAACCAGATCCTAAAGCAACTTCAAGACCATTCAGTTGCTCTAGGCTTCTTTTACTGGCTAAAGCGTCAACTGGGCTTCTGGCATGATGGGCATACTTACACCACCATGGTTGGTATCCTAGGCCGTGCAAGAGAGTTTGGTGCTTTAAACAAATTGCTAGAGCAGATGGTCAAGGATGGATGCCGGCCTAATGTTGTTACTTACAATCGTCTAATTCACAGCTATGGCCGTGCGAACTACCTAAAGGAGGCACTGAATGTGTTCAACCAAATGCAGGAGATGGGATGCAAGCCTGATCGTGTTACTTACTGCACACTGATTGATATTCATGCAAAAGCTGGATTTCTTGATGTGGCTATGTCTATGTATGAAAGAATGCAAGAAGCTGGCCTTTCTCCCGACACATTTACATACAGTGTCATGATCAACTGCCTTGGAAAATCTGGTAATTTAGCTGCAGCCCATAGGCTATTTTGTGAGATGGTTGATCAGGGTTGTGTTCCTAATATTGTCACGTACAATATCTTGATTGCTTTGCAAGCTAAAGCAAGGAACTATCAGACAGCATTGAAACTATACCGTGACGTGCAGAATGCAGGATTTAAACCCGACAAAGTTACTTACAGCATTGTAATGGAAGTGCTTGGCCACTGTGGGTATCTTGAGGAAGCAGAAGCAGTTTTTGTTGAGATGAAACAGAACAATTGGGTTCCAGATGAACCTGTTTATGGTCTTTTGGTAGACCTGTGGGGAAAGGCTGGTCATGTTGAGAAGGCTTGGCAATGGTATCAGGCAATGCTGAGAGCAGGTTTGCTTCCAAACGTACCAACTTGCAATTCACTTCTCAGTGCATTCCTCAGGGTGCATCGATTGCCAGATGCATATAATCTTCTCCAAAACATGGTGGCTCTTGGCTTAAACCCATCTTTGCAGACGTATACCTTACTTCTCAGTTGTTGTACGGAGGCACAATCATCATATGATATGGGATTTTGTTGTGAGCTTATGGCAGTCACTGGCCATCCTGCGCATGCATTTTTACTGTCCATGCCAGCAGCGGGACCTGATGGTCAAAACGTGCGGGATCATGTAAGTAAATTCTTAGACCTTATGCATTCCGAGCATAGAGAGGGCAAAAGAGGGCTTGTAGATGCAGTGGTGGATTTTCTTCACAAATCTGGGCTGAAGGAGGAGGCTGGTTCGGTTTGGGAGGTGGCTGCACAAAAAAATGTGTATCCTGATGCTGTCAAGGAAAAAAGCTCTTGTTATTGGCTTATAAATCTTCATGTCATGTCTGATGGAACTGCTGTAACAGCATTGTCTAGGACACTTGCTTGGTTTCGCAGACAGATGCTGGCATCTGGGGTTGGCCCTAACCGGATAGATATTGTCACTGGATGGGGTCGTAGGAGTAGGGTGACAGGTTCTTCTCTTGTGAGACAGGCAGTGCATGAACTGCTACATGTATTCAGTTTCCCATTTTTCACAGAAAATGGCAATTCAGGTTGTTTTGTGGGATGCGGGGAGCCTCTTAGTCAATGGTTGCACCACTCTTATGTGGAACGAATGCATTTACTGTAG 2646 0.4312 MPNMLRAKQISTLSSNARSFFLSGSRCNAADGNSCTCPEDETCVSRGRQRKNNEELLVQKPSSLVSKTTSQVAGTLVSGNLANGPASHKAGVVDQSGRVQQIRSASYAPSKSDSVTYACVVDGGQEHVAHSSSLNADQFYRAGIAAVNFLSDVVNYKFPLSDGMGILNYSKNYMVDPARTLPNVRSSNVQQIRKENFTAIHPKPPVSTHPGPSKHTNNHHAAKGKVDKSNLAKGFKHVASSGTEKSGAAPNIPLNNHDRRALPQRTRTHSNRFVTNFGSNVQTSNPRMLGSFKESFNKHPRDLNMPAGIAPMNRHFTNTGHVVEVVKDILKQLKWGPATEKALYNLNFSIDAYQANQILKQLQDHSVALGFFYWLKRQLGFWHDGHTYTTMVGILGRAREFGALNKLLEQMVKDGCRPNVVTYNRLIHSYGRANYLKEALNVFNQMQEMGCKPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEAGLSPDTFTYSVMINCLGKSGNLAAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDVQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFVEMKQNNWVPDEPVYGLLVDLWGKAGHVEKAWQWYQAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVALGLNPSLQTYTLLLSCCTEAQSSYDMGFCCELMAVTGHPAHAFLLSMPAAGPDGQNVRDHVSKFLDLMHSEHREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRRQMLASGVGPNRIDIVTGWGRRSRVTGSSLVRQAVHELLHVFSFPFFTENGNSGCFVGCGEPLSQWLHHSYVERMHLL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2157 881 Pfam PPR repeat 387 416 IPR002885 -
Ssu1g2157 881 Pfam PPR repeat 597 626 IPR002885 -
Ssu1g2157 881 Gene3D Tetratricopeptide repeat domain 483 554 IPR011990 GO:0005515
Ssu1g2157 881 Gene3D Tetratricopeptide repeat domain 348 482 IPR011990 GO:0005515
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Ssu1g2157 881 Pfam PPR repeat 485 517 IPR002885 -
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Ssu1g2157 881 SMART SMR_2 778 870 IPR002625 -
Ssu1g2157 881 MobiDBLite consensus disorder prediction 200 225 - -
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Ssu1g2157 881 SUPERFAMILY SMR domain-like 779 859 IPR036063 -
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Ssu1g2157 881 PANTHER BNAA07G31720D PROTEIN 4 881 - -
Ssu1g2157 881 ProSiteProfiles Smr domain profile. 781 862 IPR002625 -
Ssu1g2157 881 TIGRFAM PPR: pentatricopeptide repeat domain 421 454 IPR002885 -
Ssu1g2157 881 TIGRFAM PPR: pentatricopeptide repeat domain 386 420 IPR002885 -
Ssu1g2157 881 TIGRFAM PPR: pentatricopeptide repeat domain 491 525 IPR002885 -
Ssu1g2157 881 TIGRFAM PPR: pentatricopeptide repeat domain 526 559 IPR002885 -
Ssu1g2157 881 TIGRFAM PPR: pentatricopeptide repeat domain 456 490 IPR002885 -
Ssu1g2157 881 TIGRFAM PPR: pentatricopeptide repeat domain 561 595 IPR002885 -
Ssu1g2157 881 TIGRFAM PPR: pentatricopeptide repeat domain 597 630 IPR002885 -
Ssu1g2157 881 Pfam PPR repeat family 628 675 IPR002885 -
Ssu1g2157 881 Pfam PPR repeat family 418 464 IPR002885 -
Ssu1g2157 881 Pfam PPR repeat family 523 569 IPR002885 -
Ssu1g2157 881 PANTHER OS03G0856100 PROTEIN 4 881 - -
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Ssu1g2157 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Ssu1g2157 881 Gene3D - 758 860 IPR036063 -
Ssu1g2157 881 MobiDBLite consensus disorder prediction 239 259 - -
Ssu1g2157 881 Gene3D Tetratricopeptide repeat domain 566 684 IPR011990 GO:0005515
Ssu1g2157 881 SUPERFAMILY TPR-like 491 700 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2157 Ssu-Chr1 61434188 61437491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2157 423 838 Miscellaneous Gene Families AT4G11690 24.419 3.10e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2157 - - gmx:100819996 1659.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2157 1 61434188 61437491 Ssu1g2157 1 61434188 61437491 ECH