Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2152 atggccgAATCAGCTAACTCAATCCACAACAGTGACCATAAGTTGACCGGCAAAGTTGCCATAATCACCGGCGGGGCCAGCGGCATCGGCGAAGAGACGGCGCGTCTGTTTGCCAACCATGGTGCGCGAATGGTGGTCATCGCAGACATTCAAGATGACCTGGGCAACCAAGTGGCAGCATCCATTGGCTCTCacagATGCAGCTATGTCCATTGTGACGTGACTGATGAAGAGCAAGTCAAAAACCTCGTGGATTCGACGGTCAACGCTTATGGCCAGTTAGACGTCATGTTCAGCAACGCGGGCATCGTCAGTCCCTCCAACCAGACAATCCTGGACCTCAACTTTTCCCAGTTCGACCGTCTCTTCGCCGTCAACGCGCGGGGCATGGCGGCGTGTGTGAAGCACGCGGCGCGCTCGATGGTGGAGCGGCGCGTGAAGGGCAGCATCGTGTGCACGGCGAGCTTGTCGGCGTCGCACGGCGGCTTACGGCGCACGGACTACGTCATGTCGAAGCACGCGGTGAAGGGGCTGGCGCGTAGCGCGAGCGCGCAGCTTGGGGCGCACGGTATCAGGGTGAACTGCGTCTCGCCGAGTGGGTTGGCCACGCCCTTGACACGTGCCGCGCACGCCACGATGGAGACGCAAGAGTTGCAAAAACACTATGCGCAGAGCTCGAGGCTGAAGGGCGTCCTTTTGACCCCCAGACATGTCGCAGATGCGGTGCTGTTTCTCGCGTCCGGTGACTCTGACTTTGTAACCGGACACGATCTTGTGGTGGACGGTGGTTTTGCCCGGGCCTAA 804 0.5896 MAESANSIHNSDHKLTGKVAIITGGASGIGEETARLFANHGARMVVIADIQDDLGNQVAASIGSHRCSYVHCDVTDEEQVKNLVDSTVNAYGQLDVMFSNAGIVSPSNQTILDLNFSQFDRLFAVNARGMAACVKHAARSMVERRVKGSIVCTASLSASHGGLRRTDYVMSKHAVKGLARSASAQLGAHGIRVNCVSPSGLATPLTRAAHATMETQELQKHYAQSSRLKGVLLTPRHVADAVLFLASGDSDFVTGHDLVVDGGFARA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2152 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Ssu1g2152 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Ssu1g2152 267 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Ssu1g2152 267 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Ssu1g2152 267 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 266 - -
Ssu1g2152 267 Gene3D - 4 265 - -
Ssu1g2152 267 Pfam Enoyl-(Acyl carrier protein) reductase 24 264 - -
Ssu1g2152 267 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Ssu1g2152 267 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Ssu1g2152 267 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Ssu1g2152 267 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Ssu1g2152 267 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Ssu1g2152 267 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Ssu1g2152 267 PANTHER OXIDOREDUCTASE-RELATED 1 266 - -
Ssu1g2152 267 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 264 IPR036291 -
Ssu1g2152 267 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 18 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2152 Ssu-Chr1 61290013 61294301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2152 14 263 Acyl Lipid Metabolism Gene Families AT1G62610 27.757 3.66e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2152 - - gmx:100817513 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2152 1 61290013 61294301 Ssu1g2152 1 61290013 61294301 ECH