Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2133 ATGTTGGAGGGTCCAACCTTTCTTGTTTCAAGGGACTTACCGAGCTCATGTGAGCAAGAGACCAGGTGGATTTACAATTCCTTCTGTGTGATGGAGCTCGCGAACAATAAGCGTCGACTGGAGCTAGAGGAAGAAGCTGTGTTGAGAAAGTCAAGCAAGCTTTCAGATGCTCCTGAGGAAGgggaaacaaaaaagaatatccAAGATGTTTCCCTATCTGTTAACCAAGCGAATGACCAAAACCATGCAAGTGATCAGTCAGATTCAAGTTCACTTATCTTCCAACTTGGTCGGGACATCTCAATTAATTGTCTCCTACGGTGCTCAAGGTCTGACTATGGTTCAATTGCCTCATTGAACCAAAGTTTTCGATCTCTCGTTCGGACGGGAGAGCTTTATAGGCTGAGGCGGCAGATGGGTATCATAGAGCATTGGGTTTACTTCTCTTGTAATCTCCCCGAATGGGAGGCATTTGATCCAAACACTGGTCGATGGATGCGCTTGCCTAGAATGCCTTCTAATGAATGCTTTATCTGTTCAGATAAGGAGTCGTTGGCTGTTGGTACTGAGCTTCTTGTTTTTGGAAAGGAAATAATGTCTCCTGTCATATACAGATATAGCATTTTGATGAACTCGTGGTCATCTGGTATGGAAATGAATGTTCCTAGATGCTTGTTCGGTTCTGCCAGCCTTGGAGAAGTTGCCATATTAGCTGGTGGTTGTGATCCACGTGGCAACATCTTGAGCTCAGCTGAGCTTTATAACTCAGAAACTGGAACGTGGGAGCTTCTTCCAAACATGAATAAAGCAAGGAAAATGTGTTCGGGTGTATTTATAGATGGGAAATTTTATGTCATTGGCGGGATTGGAGTAGGTGACTCAAAGCAGCTAACAAGTGGGGAGGAGTTTGATCTGCAGACAAGAAAATGGCGAGTAATACCCAACATGTTCCCTGGGAGAAATGGAGGATCTGAGGTGACTGAGGTATTGGCTGCTGCTGAGGCTCCTCCTTTGGTTGCAGTTGTAAATAATGTATTGTATGCTGCAGATTATGCCCAACAAGAGGTGAGGAAATATGATAAAGACAATAATTCATGGGTCACTATTGGAAGATTACCTGACCGGATAGTCTCAATGAATGGTTGGGGATTAGCCTTTCGTGCATGTGGAAATCGCCTAATTGTTATTGGTGGGCCAAGAGCTCTAGATGGAAGGGTAATTGAGATCAATGCTTGTGTCCCAGGTGAAGGTGAACCACAGTGGAACCTGCTTGCTAGCAGGCAATCGGGGAGCTTTGTGTATAACTGCGCAGTGATGGGATGCTGA 1326 0.4427 MLEGPTFLVSRDLPSSCEQETRWIYNSFCVMELANNKRRLELEEEAVLRKSSKLSDAPEEGETKKNIQDVSLSVNQANDQNHASDQSDSSSLIFQLGRDISINCLLRCSRSDYGSIASLNQSFRSLVRTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNTGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNVPRCLFGSASLGEVAILAGGCDPRGNILSSAELYNSETGTWELLPNMNKARKMCSGVFIDGKFYVIGGIGVGDSKQLTSGEEFDLQTRKWRVIPNMFPGRNGGSEVTEVLAAAEAPPLVAVVNNVLYAADYAQQEVRKYDKDNNSWVTIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGEPQWNLLASRQSGSFVYNCAVMGC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2133 441 Gene3D - 134 419 IPR015915 GO:0005515
Ssu1g2133 441 SUPERFAMILY Kelch motif 150 438 IPR015915 GO:0005515
Ssu1g2133 441 SMART kelc_smart 234 281 IPR006652 GO:0005515
Ssu1g2133 441 SMART kelc_smart 282 331 IPR006652 GO:0005515
Ssu1g2133 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 10 441 - -
Ssu1g2133 441 Pfam Kelch motif 222 268 IPR006652 GO:0005515
Ssu1g2133 441 Pfam Kelch motif 270 316 IPR006652 GO:0005515
Ssu1g2133 441 Coils Coil 30 50 - -
Ssu1g2133 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 10 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2133 Ssu-Chr1 60760422 60761747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2133 90 315 EF-hand Containing Proteins AT4G39560 26.957 1.94e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2133 - - gmx:100788507 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2133 1 60760422 60761747 Ssu1g2133 1 60760422 60761747 ECH