Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2130 ATGGCCGATTCCACCCCTCTTCTCTGCCAACCCAACTCATCTTCTGACACACTAGAGTCACCACGATCACCATCAACAAACAAACACCAGCCATCTCTGGGCTCCACCGTAGAACTCTGCATAGGCGAATTCAACTGGTCCCAGTTCCTCCAATCCGTCCTCGTCTCCTTCGCCTGGATCTTCGACGCCCAACAGACCTTCATCACCGTCTTTACCGACGCGCAGCCCGCGTGGCACTGCACCCAACAAGGTGGCGGCAGCGACGCGTGCGCCGCAACCAACAACGCGTGCGACCTCCCGAAGGGGTCGTGGGCGTGGAACGCACCCGCGCATGCCTCCACCGTGTCGGAGTGGGGCCTGGAGTGCGCCAGCTCCGCCGTCGCTGGGCTCCCGGCTTCAATGTTCTTCGCGGGGTGCTTGGTGGGGGGGTCCGTGTTGGCCACGCTGGCCGACTCCTCGCTCGGGCGGAAGAACATGCTCCTCTTCTCGTGCCTCTTGATGGCTCTCGCTTCCTTGCTCGCCACTTTGTCTCCCAACGTTTGGATCTATTCGGCGCTCAAGTTTCTCTCTGGGTTTTGCCGCGCCACCATTGGGACTTCGGCTCTCGTCCTGGCTTCGGAGCTCGTTGGGAAACGGTGCCGCGGGCAGATTAGTGTTATTGGGTTCTTTTGTTTCACTATAGGGTTCTTGTCCCTGCCAGCCATGGCTTACGGAAACAGGAGTTCTTCGTGGAGGAACCTTTATCTGTGGACTTCTATTGCGACCATTTTCTATTGCATATTGGTGAAGTTGTTCGTTAGTGAGTCTCCAAGATGGCTTCTAGTGCGAGGAAGGACAGAAGAAGCGGTGGTTACGCTAAAATGCATCACATCAATCACTCAAAGTAACCTCAATTTGGCCATTAATAACATGTCCCACAAGGAAGAAACATGGAACGTGGATTTATTCTCGGCCCTAAAGATTTTGCTACGAAAGAAATGGTCTTCAAGAAGGTTATTATCAATTATGGCCATGGGAATTGGCATTGGTTTGGTCTATTATGGCATGCCACTTGGCCTTCAAAACTTGTCCTTCAACCTTTACTTGAGTGTCACATTCAATGCCTTATCCGAATTACCATCCGCTTTGATTGTGTTCTTCCTCATAGACAAGTTCAATAGGAGAAGTGCACTCCTTCTCTTCACTATCCTAAGTGGTGTTTTTAGTGTGATGTCAATCATCGAAGTGAAGCTATGGACCAATCTGCAAATTGGGTTTGAGTTAATATCCTTCTTCAGTGCTTGTTCTGCGTCTAATGTTTACCTGATTTACACTACAGAACTGTTCCCAACTTGTGTGCGGAATTCAGCATTGTCAATGGCAAGGTTAGCAGTGGTATTTGGTGGCACGTTCAGTCCATTGCTGGTGGGTGCTGGTAGAGGGAATAAGTTCCTATGTTATGGGATTTTTGGGTTGGTGATAGGTTGTTCTGGGATCTTCGGAATATTCTTGCCAGAGACAAAAGGAAGAGCACTATGTGATACAATGGATGAAGaagaaatcaaagagaaaatgGCCTGTGACATGTTGGCTTAA 1575 0.4971 MADSTPLLCQPNSSSDTLESPRSPSTNKHQPSLGSTVELCIGEFNWSQFLQSVLVSFAWIFDAQQTFITVFTDAQPAWHCTQQGGGSDACAATNNACDLPKGSWAWNAPAHASTVSEWGLECASSAVAGLPASMFFAGCLVGGSVLATLADSSLGRKNMLLFSCLLMALASLLATLSPNVWIYSALKFLSGFCRATIGTSALVLASELVGKRCRGQISVIGFFCFTIGFLSLPAMAYGNRSSSWRNLYLWTSIATIFYCILVKLFVSESPRWLLVRGRTEEAVVTLKCITSITQSNLNLAINNMSHKEETWNVDLFSALKILLRKKWSSRRLLSIMAMGIGIGLVYYGMPLGLQNLSFNLYLSVTFNALSELPSALIVFFLIDKFNRRSALLLFTILSGVFSVMSIIEVKLWTNLQIGFELISFFSACSASNVYLIYTTELFPTCVRNSALSMARLAVVFGGTFSPLLVGAGRGNKFLCYGIFGLVIGCSGIFGIFLPETKGRALCDTMDEEEIKEKMACDMLA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2130 524 ProSiteProfiles Major facilitator superfamily (MFS) profile. 51 502 IPR020846 GO:0022857
Ssu1g2130 524 MobiDBLite consensus disorder prediction 1 32 - -
Ssu1g2130 524 SUPERFAMILY MFS general substrate transporter 117 505 IPR036259 -
Ssu1g2130 524 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 27 517 - -
Ssu1g2130 524 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 3 27 517 - -
Ssu1g2130 524 Pfam Sugar (and other) transporter 116 505 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g2130 524 Gene3D MFS general substrate transporter like domains 48 511 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2130 Ssu-Chr1 60648024 60650790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2130 1 515 Organic Solute Cotransporters AT1G16390 59.152 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2130 - - gmx:100812722 849.351