Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2129 ATGTTGTTGTCAAGAACACTTGGACGAACGCTCCTTGCCGCTGCTGCCAGATCAAAACATTATGCCACTACAGCTGCTGCTGGTAGCAGGGAAGGACACAACCCCCTTCAGGAGTTCTTTGAGGCAGACAGGAGCcctgatgatgacaaacctgtTGTTTATGGTCGGAGTTGGAAGGCGTCGGAACTGCGTCTGAAATCTTGGGATAACCTTCATAAGTTGTGGTATGTGCTGTTAAAGGAGAAGAACATGTTGATGACTCAACGTCAAATGCTTAATGCACAGAACCTGCGTTTTCCTCACCCAGAGCGCATCCCTAAGGTGAGGAAGTCGATGTGTCGCATCAAGCAAGTACTTACTGAGAGAGCAATTGAAGAACCAGATCCCAGGAGGTCTGCTGATATGAAGAGAATGATAAATGCTCTTTGA 429 0.4522 MLLSRTLGRTLLAAAARSKHYATTAAAGSREGHNPLQEFFEADRSPDDDKPVVYGRSWKASELRLKSWDNLHKLWYVLLKEKNMLMTQRQMLNAQNLRFPHPERIPKVRKSMCRIKQVLTERAIEEPDPRRSADMKRMINAL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2129 142 Gene3D - 30 131 IPR038340 -
Ssu1g2129 142 CDD Ribosomal_L29_HIP 61 122 - -
Ssu1g2129 142 SUPERFAMILY Ribosomal protein L29 (L29p) 58 125 IPR036049 GO:0003735|GO:0005840|GO:0006412
Ssu1g2129 142 PANTHER RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED 1 142 IPR010729 GO:0003735|GO:0005761|GO:0006412
Ssu1g2129 142 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 36 122 IPR010729 GO:0003735|GO:0005761|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2129 Ssu-Chr1 60594629 60595515 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2129 K17428 - gmx:100500208 258.455