Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2125 ATGGCGTCGAGTATAGGCATGATGGATAGCGCGTACTTTGTCGGCAGGAACGAGATTCTCACTTGGATCAACAACCGCCTTCAACTTAACCTCTCTCGCATTGAGGAGGCTGCATCTGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCACAAGGTGAATTTTGATGCAAAGACAGAGTACGATATGATCCAGAATTACAAAGTTCTACAGGATGTGTTCAACAAGCTGAAAATTGACAAGCATATTGAAGTTGGCAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTACAATGGCTGAAACGTTATTGTGATTCTGTAAATGGTGGCATTATGAATGAGAACTACAATCCTGTGGAGCGTAGGATTAAGGGTGGAAAGGACCGGAATGTTAAGAGTCTAAAGAGCTCAAAATCACTGCAAACAAATACTATGAATCATTCCAGTTCAGGCGACTCACTCAGGTCCAAGCAATTGAGGTCAAGTGGAGGAGCAGACGAAGCTAATTCTTCAGTTGAAATTCAGGCTTTGTCCAAGCAGGTTTCTGATCTCAAACTTTCAGTGGATCActtggaaaaagaaagagactTTTACTTTGCTAAACTAAGGGATATAGAAATTCTTTGTCAAACTACAGAACTGGAGAACGATCCTATGTCTCTAGCAATTAAGAAGATTTTGTATGCTGCTGATGCAAAAGGATCAGCATTAGATGAAGCTCAGGAATACCTTAATGAAGCCATGAATGCTGTTGAACCAGAAGCAGAAGCAGAAGCAGAAATTGAAGCCTGA 822 0.4124 MASSIGMMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVGRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRIKGGKDRNVKSLKSSKSLQTNTMNHSSSGDSLRSKQLRSSGGADEANSSVEIQALSKQVSDLKLSVDHLEKERDFYFAKLRDIEILCQTTELENDPMSLAIKKILYAADAKGSALDEAQEYLNEAMNAVEPEAEAEAEIEA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2125 273 Gene3D - 182 263 - -
Ssu1g2125 273 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 176 246 IPR004953 GO:0008017
Ssu1g2125 273 Gene3D - 6 134 IPR036872 -
Ssu1g2125 273 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Ssu1g2125 273 MobiDBLite consensus disorder prediction 136 177 - -
Ssu1g2125 273 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Ssu1g2125 273 SUPERFAMILY EB1 dimerisation domain-like 183 242 IPR036133 GO:0008017
Ssu1g2125 273 MobiDBLite consensus disorder prediction 145 177 - -
Ssu1g2125 273 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Ssu1g2125 273 Coils Coil 184 204 - -
Ssu1g2125 273 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 267 IPR027328 GO:0008017
Ssu1g2125 273 Pfam EB1-like C-terminal motif 201 239 IPR004953 GO:0008017
Ssu1g2125 273 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2125 Ssu-Chr1 60555149 60569427 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2125 K10436 - gmx:100809691 486.878