Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2106 ATGAGCTCTGGTAGGGTTTGTAAGGCAATAGAGACTACGTCTCCACTATCTAGTCAAGAAGAAGATCTTTACTCTAGCAGtgagaaaaaagttaaaacaaaggaGAGGGTTGATGATGTTACTACAATGGAGGAGGACCCAAAAAACTCTTACAAGGAGAAACGTTTAGGTCATGAAAGGTCTATTAAGGACAAGAATATTGGCATGGAAGAGATAAAGGATGAAGATCTGTCAAAAAGTAGATGGTATAAGCATCATGAGGAGGAAAAGGTTAAATCAGATTCCCAAGTTGTGATCACTTTGATTCTTGAAGGTTGGGAACCAAATCATCCATGTCATTCAATAGTGGAGGAGGGAACAATGGGGGAGCACGTGGTTTTATCTGTTGTTGACCCTCTTCTTATGGCACCTGCAACTTTGCAACCACAGCATGGCGGTGGTGCCCGAGTTTCACTCATTGAGGCTGCTACTCATGTTAATGATGTTGGGAAATGTGATACActgaaaggagaagaagaagaagaagaagacctTATCCAAATGGTGGAGTGTCGCATTTGCCAGGAGGATGATACCCTTCAAAATTTGGACATACCCTGTGCTTGCAGTGGAACCTTGAAGtttgctCATCCGAGATGTGTTCAACTATGGTGCTATGAGAAGGGTGATACAATTTGTGAAATCTGCCATCAGCCATTCAAACCTGGTTATACTGCAACGTCACCTGCCTATCATCCTGGAGATACTTCAATTGATATCAGTGATGACTGGGCAGCCTCTAGTAATCCTTTAGATATGCACGATCCTCGACTTTTGGCAATTGCAGCTGTGGAGCACCAAGTTCCGGAGACTAATCATGAAGATTATGTCTATACTGGCACCGGTGGAATGACATTGTGGCACTCTGTTGGTCTAATTTTAATGGCTCTTTTACTTCTGAGGCATGCTGCTCCCCTCTTCAATACTGATGTGGAGAAAGTTGTAACGTATTTTTATTTTTTCTTTCTTCGTGCGGCTGCTGTTATCCTTCCTTTCTATCTTATGGCCcggataatttgcataatacaGCATCAAAGGCAAAGACAACAAGCTGCTGAAGAACTTCCATTTATGCTACAAGCAGAGGAACAACAAGTTGGCTGA 1143 0.3998 MSSGRVCKAIETTSPLSSQEEDLYSSSEKKVKTKERVDDVTTMEEDPKNSYKEKRLGHERSIKDKNIGMEEIKDEDLSKSRWYKHHEEEKVKSDSQVVITLILEGWEPNHPCHSIVEEGTMGEHVVLSVVDPLLMAPATLQPQHGGGARVSLIEAATHVNDVGKCDTLKGEEEEEEDLIQMVECRICQEDDTLQNLDIPCACSGTLKFAHPRCVQLWCYEKGDTICEICHQPFKPGYTATSPAYHPGDTSIDISDDWAASSNPLDMHDPRLLAIAAVEHQVPETNHEDYVYTGTGGMTLWHSVGLILMALLLLRHAAPLFNTDVEKVVTYFYFFFLRAAAVILPFYLMARIICIIQHQRQRQQAAEELPFMLQAEEQQVG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2106 380 Pfam Protein of unknown function (DUF3675) 235 352 IPR022143 -
Ssu1g2106 380 PANTHER OS11G0600700 PROTEIN 121 373 - -
Ssu1g2106 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 241 IPR013083 -
Ssu1g2106 380 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 121 373 IPR033275 -
Ssu1g2106 380 SUPERFAMILY RING/U-box 182 234 - -
Ssu1g2106 380 MobiDBLite consensus disorder prediction 23 55 - -
Ssu1g2106 380 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g2106 380 SMART ringv_2 183 230 IPR011016 GO:0008270
Ssu1g2106 380 ProSiteProfiles Zinc finger RING-CH-type profile. 176 236 IPR011016 GO:0008270
Ssu1g2106 380 MobiDBLite consensus disorder prediction 1 55 - -
Ssu1g2106 380 Pfam RING-variant domain 184 229 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2106 Ssu-Chr1 60001068 60018593 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2106 - - gmx:100795900 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2106 1 60001068 60018593 Ssu1g2106 1 60001068 60018593 ECH