Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2089 ATGACACACTTGAAATGGTTCGACACTTTGCTTCGAAGCAGTGCGAACAAGTTGGTTCGTTGCCGCATGTCCACGTGGCATCACAAAGCTGAGTTCCCCGTCAGCCTCAAACCACCAAAGCCAAACGAGACCCTTAGGAAGCAGCTTCAACGCAACAGGCACACCAAGGTGCTGCAACTTTTCAGATCCTTATTAAGAAAAAGACCCACTTTCAACTCCATTGACAGCTTTTCTCTGCTGTATGCCCTCAAAGCCTGCAACCGCAAACACTCCTCCACCCAAGGAAAACAACTGCACGCCCTCGTCATAAAACTTGGGTACCAAGCCACGGTTCAACTCCAGACATCCCTTCTGAAAACGTACGCCGAACGTGGCAACCTGCGTGATGCACACCAAGTGTTCGACGAAATACCCTCTAAGAACACCATATGCTGGACGTCTTTGATTTCTGCGTATGTTGACAATCACAAAGCTGGGAGAGCTTTGCAACTGTTCAGACTGATGCAGATGAACAATGTGGAGCCTGACCAAGTCACTGTGACTGTTGCTCTCTCCGCCTGTGCTGAGACTGGGGCACTGGAAATGGGTGAATGGATCCACGCTTTCGTGCGGCGTAAACGAGAGATGAACAGAGATTTGTGTTTGGACAATGCTCTTATAAATATGTATGCCAAATGTGGGGATGTTGTAGCTGCCAGGAAGGTGTTTGATAGCATGAGAAACAAAGATGTTACGACTTGGACTTCCATGATTGTGGGGCATGCGCTGCATGGGCAAGCACGTGAGGCTCTTCAACTTTTCTCAGAAATGAACACAAGGAGGGACAAGGGTGATTATGTCATGATCCCGAATGATGTAACGTTCATTGGAGTTTTAATGGCTTGCAGCCATGCAGGGTTGGTTGAGGAAGGGAAGTGGCATTTCAGAAGTATGAGTGAAGTTTATGGTATACAGCCCAGAGAGGCTCACTTTGGCTGCATGGTGGATCTTTTATGCAGAGGTGGGCATCTGAGGGAATCCTATGACTTCATTATGGAGATGCCAGTGCCGCCAAATGCGGTTGTCTGGAGAACCTTGTTGGGGGCTTGCGGTGTCCATGGTGAATTAGAGCTAGCTGCAGAAGTTAGGCACAAGCTACTCGAGCTGGACCCTGGCTATGTGGGTGACAGTGTTGCTATGTCTAATATTTATGCAAATAAAGGCATGTGGAATGAGAAGATAGTTGTTAGGAATCAGATAAAACAGTCAAGGGCTCCTGGCTGTAGCTCAATTGAGGGGGGAAGTGGGGTTAGTGAATTTGTTACCTCAGATGATGATCATCCTTTGATGACAGATAAGTGA 1341 0.4773 MTHLKWFDTLLRSSANKLVRCRMSTWHHKAEFPVSLKPPKPNETLRKQLQRNRHTKVLQLFRSLLRKRPTFNSIDSFSLLYALKACNRKHSSTQGKQLHALVIKLGYQATVQLQTSLLKTYAERGNLRDAHQVFDEIPSKNTICWTSLISAYVDNHKAGRALQLFRLMQMNNVEPDQVTVTVALSACAETGALEMGEWIHAFVRRKREMNRDLCLDNALINMYAKCGDVVAARKVFDSMRNKDVTTWTSMIVGHALHGQAREALQLFSEMNTRRDKGDYVMIPNDVTFIGVLMACSHAGLVEEGKWHFRSMSEVYGIQPREAHFGCMVDLLCRGGHLRESYDFIMEMPVPPNAVVWRTLLGACGVHGELELAAEVRHKLLELDPGYVGDSVAMSNIYANKGMWNEKIVVRNQIKQSRAPGCSSIEGGSGVSEFVTSDDDHPLMTDK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2089 446 TIGRFAM PPR: pentatricopeptide repeat domain 246 270 IPR002885 -
Ssu1g2089 446 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Ssu1g2089 446 TIGRFAM PPR: pentatricopeptide repeat domain 217 244 IPR002885 -
Ssu1g2089 446 Pfam E motif 366 425 IPR046848 -
Ssu1g2089 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Ssu1g2089 446 PANTHER - 111 443 - -
Ssu1g2089 446 PANTHER - 41 140 - -
Ssu1g2089 446 Pfam PPR repeat 324 347 IPR002885 -
Ssu1g2089 446 Pfam PPR repeat 246 271 IPR002885 -
Ssu1g2089 446 Pfam PPR repeat 217 243 IPR002885 -
Ssu1g2089 446 Pfam PPR repeat 286 313 IPR002885 -
Ssu1g2089 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Ssu1g2089 446 PANTHER - 111 443 - -
Ssu1g2089 446 PANTHER - 41 140 - -
Ssu1g2089 446 Pfam PPR repeat family 140 188 IPR002885 -
Ssu1g2089 446 Gene3D Tetratricopeptide repeat domain 42 214 IPR011990 GO:0005515
Ssu1g2089 446 Gene3D Tetratricopeptide repeat domain 217 427 IPR011990 GO:0005515
Ssu1g2089 446 MobiDBLite consensus disorder prediction 419 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2089 Ssu-Chr1 59450246 59451586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2089 52 441 Glycoside Hydrolase AT3G49170 35.025 2.49e-75 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2089 - - gmx:102668293 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2089 1 59450246 59451586 Ssu1g2089 1 59450246 59451586 ECH