Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2085 ATGGTGGAGAAATTGGGAACGATGAGTGAGGTATTTGAAGGGTACGAGCGTCAATACTGTGAGCTATCAGCGAATCTTTCGCGGCAATGCACTGCGGCTTCTGCTCTTGATGGAGAACAGAAGAAGCAGAAACTTTCTGATATAAACACTGGATTAGATGATGCTGACACATTGATTCGGAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGTATGAAGGCATCTCTTCTTGCCAAGTTAAGGgaatataaaactaatttgaACAATTTGAAAAGTGAAGTTGAAAGAGTCACATCAGCTAATGTCAGCCTCACTGCTCGAGATGAGTTGTTGGAGTCAGGAAAGGCTGATACACTGGCGGTATCTAACGATCAAAAGGGAAGACTTTTGATGTCTACTGAAAGACTAAATCTGTCCACTGACAGAATAAAGGAGAGCAGACGAACAATGCTGGAGACAGAGGAGCTTGGTGTCTCTATCCTCCAAGATTTGCATCAACAACGTCAATCCCTGCTCCATGCCCATAAGACGCTCCATGGAGTGGATGATAACATTAGCATGAGCAAGAAGATTTTGTCAGCCATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTGGCTCCTTAATGACAGCTCTGGTCCTTGCaattataatcattttatatttcaagcTGAGTCATTAG 687 0.4178 MVEKLGTMSEVFEGYERQYCELSANLSRQCTAASALDGEQKKQKLSDINTGLDDADTLIRKMDLEARSLQPSMKASLLAKLREYKTNLNNLKSEVERVTSANVSLTARDELLESGKADTLAVSNDQKGRLLMSTERLNLSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHKTLHGVDDNISMSKKILSAMSRRMSRNKWIVGSLMTALVLAIIIILYFKLSH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2085 228 Gene3D - 124 204 - -
Ssu1g2085 228 CDD SNARE_Vti1 134 194 - -
Ssu1g2085 228 Pfam Snare region anchored in the vesicle membrane C-terminus 135 200 - -
Ssu1g2085 228 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 8 227 - -
Ssu1g2085 228 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 8 227 - -
Ssu1g2085 228 PIRSF Membrin-2 8 225 IPR027027 GO:0005484|GO:0005794|GO:0016192
Ssu1g2085 228 SUPERFAMILY SNARE fusion complex 138 196 - -
Ssu1g2085 228 Pfam Vesicle transport v-SNARE protein N-terminus 19 96 IPR007705 GO:0006886|GO:0016020
Ssu1g2085 228 SUPERFAMILY t-snare proteins 13 99 IPR010989 GO:0016020|GO:0016192
Ssu1g2085 228 Gene3D - 6 104 IPR038407 -
Ssu1g2085 228 Coils Coil 74 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2085 Ssu-Chr1 59433110 59435508 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2085 K08493 - gmx:100801744 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2085 1 59433110 59435508 Ssu1g2085 1 59433110 59435508 ECH