Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2062 atgTTTGGTTCAAAGAAAACTCATTTGAGAGATGTTAAGCCTAGCTCTGTTGGTCCTGTTCATAACCCCTTTGATTCTGATGAAGAGACAAAAGATAAAACGTATAATTCCTCTAAGAAGACTTTAACCAACACCAACCcctttgatgatgatgttgttgCCAGTGGCCACTCTTCCTCATCTTCTTATGCCAACAGAAACAGGTATAAGAACGATTTCCGCGACTCAGGGGGGTTGGAGAGTCAATCAGTGCAGGAATTGGAGAACTATGCTGTTTACAAGGCTGAAGAGACCACAAAATCAGTGAACGGTTGTTTGAAGATAGCAGAGGAAATGAGAGAGGATGCTACCAAGACTTTGGTGATGCTGCACCAACAGGGTGAGCAGATTACAAGGAGTCACCATGTTGCTGCTGATATTGATCATGATTTGAGTCGGGGAGAAAAGCTTTTGGGAAGTCTTGGTGGCATGTTCTCCAAAACTTGGAAACCAAAGAAGCCAGGCACGATAACTGGCCCTGTTGTTTTTGGAGATGATCCAGTGAGAAGAAAGGGCAACCACATGGAGCAAAGAGAGAAGTTAGGATTGACTTCTGCCCCTAAAGGGCAGTCGAAGTCACTGACAACACTTGCTGAGCCAACACATGCGCTTGAAAAAGTTGAGGTTGAAAAGGGAAAGCAAGATGATGCACTGTCAGATTTAAGTGATCTCTTGGGAGAACTGAAAGACATGGCCATTGACATGGGATCTGAAATGGACAGGCAAAACAAAGCCTTGGACGGTTTTGACAATGATATGGAGAAGTTGACCGTCCGCGTGAATGGTGCTAATCAGCGTACTCGTCGTTTACTTGGAAAATAG 861 0.4321 MFGSKKTHLRDVKPSSVGPVHNPFDSDEETKDKTYNSSKKTLTNTNPFDDDVVASGHSSSSSYANRNRYKNDFRDSGGLESQSVQELENYAVYKAEETTKSVNGCLKIAEEMREDATKTLVMLHQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGMFSKTWKPKKPGTITGPVVFGDDPVRRKGNHMEQREKLGLTSAPKGQSKSLTTLAEPTHALEKVEVEKGKQDDALSDLSDLLGELKDMAIDMGSEMDRQNKALDGFDNDMEKLTVRVNGANQRTRRLLGK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2062 286 MobiDBLite consensus disorder prediction 169 208 - -
Ssu1g2062 286 CDD SNARE_SNAP25N_23N_29N_SEC9N 89 153 IPR044766 GO:0005484|GO:0031201
Ssu1g2062 286 SUPERFAMILY SNARE fusion complex 223 284 - -
Ssu1g2062 286 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 221 283 IPR000727 -
Ssu1g2062 286 Gene3D - 218 285 - -
Ssu1g2062 286 SMART tSNARE_6 87 154 IPR000727 -
Ssu1g2062 286 SMART tSNARE_6 216 283 IPR000727 -
Ssu1g2062 286 MobiDBLite consensus disorder prediction 37 67 - -
Ssu1g2062 286 CDD SNARE_Qc 226 282 - -
Ssu1g2062 286 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 286 - -
Ssu1g2062 286 SUPERFAMILY SNARE fusion complex 82 152 - -
Ssu1g2062 286 MobiDBLite consensus disorder prediction 1 81 - -
Ssu1g2062 286 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 286 - -
Ssu1g2062 286 Gene3D - 78 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2062 Ssu-Chr1 58677898 58679559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2062 K18211 - gmx:100806698 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2062 1 58677898 58679559 Ssu1g2062 1 58677898 58679559 ECH