Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2056 atgggttgTTTCGCGAGCAAAAACGCCAACACCAAGGCCAGTAGGACCGCGCGTTGGCGATCCACGGGCATTGTTGCTTTGCGCGATTCCAAATTAAAGGCATTTCCAGATGAAATTCTCGAGTTAGACAGATCAGTTCGCACTCTTGACTTGACGCATAATCGAATTGTTGACATTCCTGTGGAAATCagcaaattaattaatgtacaGCGTTTGGTATTAGCGGAGAACCTCATTGAGAGATTGCCAGTGAATTTGGGGAAACTTCAATCTCTGAAACTGATGAACCTGGATGGAAATCGAATTACTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCTTATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACTATTGGAAGTTTGAGAAATCTGTTGCTTTTAAATGTGTCAAATAACAAGTTACAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTAATGATAATCTTATTGAAGATCTTCCCTCTTCGGTGTGCAATCTCTCTCACTTGAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGATACCTCTGAATTTATTGAAAGACTGCAAAGCTCTTCAGAGCATATCACTGCATGGGAATCCTATATCAATGGATCAATTTCAGCAGATGGAGGGATTTCAAGAGTTTGAAGCGAGGAGGAAAAAGAAGTTTGACaaacaaattgattcaaatgtgATGATCGGTTCCAAAGGTCTCGATGAGGGTGTTGATCTATGA 786 0.3931 MGCFASKNANTKASRTARWRSTGIVALRDSKLKAFPDEILELDRSVRTLDLTHNRIVDIPVEISKLINVQRLVLAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERLSISGNLLTSLPATIGSLRNLLLLNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPLNLLKDCKALQSISLHGNPISMDQFQQMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2056 261 SMART LRR_typ_2 44 65 IPR003591 -
Ssu1g2056 261 SMART LRR_typ_2 66 88 IPR003591 -
Ssu1g2056 261 SMART LRR_typ_2 112 134 IPR003591 -
Ssu1g2056 261 SMART LRR_typ_2 181 204 IPR003591 -
Ssu1g2056 261 SMART LRR_typ_2 89 111 IPR003591 -
Ssu1g2056 261 SMART LRR_typ_2 135 158 IPR003591 -
Ssu1g2056 261 ProSiteProfiles Leucine-rich repeat profile. 183 203 IPR001611 GO:0005515
Ssu1g2056 261 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
Ssu1g2056 261 SUPERFAMILY L domain-like 24 221 - -
Ssu1g2056 261 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Ssu1g2056 261 SMART LRR_bac_2 160 177 - -
Ssu1g2056 261 SMART LRR_bac_2 112 131 - -
Ssu1g2056 261 SMART LRR_bac_2 135 154 - -
Ssu1g2056 261 SMART LRR_bac_2 181 200 - -
Ssu1g2056 261 SMART LRR_bac_2 89 108 - -
Ssu1g2056 261 Gene3D Ribonuclease Inhibitor 4 243 IPR032675 -
Ssu1g2056 261 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 253 - -
Ssu1g2056 261 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Ssu1g2056 261 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 2 253 - -
Ssu1g2056 261 ProSiteProfiles Leucine-rich repeat profile. 45 66 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2056 Ssu-Chr1 58455727 58463510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2056 36 221 Receptor kinase-like Gene Family AT3G47570 32.812 6.24e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2056 - - gmx:100807758 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2056 1 58455727 58463510 Ssu1g2056 1 58455727 58463510 ECH