Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2042 ATGAACAGTATGAATAAACCAGCATACGCTGCAATATGCACACATTCACCTGCAAAAcctgttcttatatttgtttcatcACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGTTTGCTGCTTCAGATGAACAATCGAGACAATTCCTTAATTTGCCAGAAGAAGCCCTGCAGATGGTTCTGTCTCAAGTCTCTGACCAAAACTTGAGGCATACTTTACAATTTGGCATTGGATTACATCATGCGGGCCTGAATGACAAAGACAGATCTCTGGTTGAGGAACTTTTTGCAAACAACAAGATTCAGATATTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGGGGACAGAATACTATGATGGAAAAACGAAGAGGTATGTTGATTTTCCAATCACTGATATTTTGCAAATGATGGGTCGTGCTGGACGGCCTCAATTTGATCAACATGGGAAAGCGGTGATTCTTGTTCATGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCCTTCCCTGTTGAGAGTAGTTTGAGGGAGCGGTTGCATGATCACATTAATGCTGAAATTATTTCTGGAACAATTTGCCATAAACAAGATGCAGTGCATTATCTTACATGGACTTACTTATTTCGTAGACTGGTAAGTATGGTTTGGTGTTTCACTAgtactaaaatagaaaatagggAAAAGTAG 732 0.3798 MNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEEALQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRERLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLVSMVWCFTSTKIENREK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2042 243 CDD SF2_C_Ski2 5 169 - -
Ssu1g2042 243 Gene3D - 1 186 IPR027417 -
Ssu1g2042 243 Gene3D - 187 242 IPR036388 -
Ssu1g2042 243 PANTHER SEC63 DOMAIN-CONTAINING 1 228 - -
Ssu1g2042 243 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 5 214 IPR001650 -
Ssu1g2042 243 Pfam Helicase conserved C-terminal domain 41 155 IPR001650 -
Ssu1g2042 243 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 1 228 - -
Ssu1g2042 243 SMART helicmild6 69 157 IPR001650 -
Ssu1g2042 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 185 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2042 Ssu-Chr1 57999421 58001287 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2042 K18663 - gmx:100811503 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2042 1 57999421 58001287 Ssu1g2042 1 57999421 58001287 ECH