Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2035 ATGGCGGTTCAGAGCTCCACTTCCGGCGAAGCACAAGCTTCGAAGAATGTTTCCTATGACAATTTCTTTTTATGGAGAGAGTTTGTGTGGGGAGCTGTTGCAGGTGCTTTTGGGGAAGGAATGATGCATCCAGTGGATACCGTTAAAACCCGACTACAAAGTCAAGCTATTCTAAATGGAATTCAGAACCAGAAAAACATATTGCAGATGGTGCGATCTGTCTGGCAGGTTGATGGATTAAAAGgcTTTTACAGGGGTGTAACACCTGGTATTACTGGATCTCTTGCAACTGGTGCAACATATTTTGGTGTCATAGAGTCCACAAAAAAGTGGATTGAGGATTCACATCCTAGCCTTGGAGGCCACTGGGCACATTTCATTGCTGGAGCTGTTGGGGACACTCTAGGTTCTTTTGTGTATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGGttcaaggcacaattacatctTGGAGTTCTGTTGCTGTGAAGGATGGCATCGCAATCAAGCCGGGCACACAAATATATGGTTATTATACAGGGATGTTCCATGCTGGCTGCTCAATATGGAAGACACAGGGCTTAAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTTCCATTTGCTGGCTTAATGGTAATGTTCTATGAAGGTTTGAAAGATGTGACAAAATATGTAGAGCAAAGATGGATATCTAGCCCAAATTGTCATGTTAATAATTCATTTGAGGGACTGGTTTTAGGAGGATTGGCTGGTGGTCTCAGCGCATATCTCACCACTCCTTTGGATGTTGTTAAAACAAGACTGCAAGTGCAGGGTTCAACTTTGAGGTATAATGGTTGGTTGGATGCAATTCGCAATATATGGGCTACAGAAGGCATGAAGGGGATGTTTAGGGGTAGCATCCCCAGGATTACATGGTACATTCCAGCTTCAGCGCTTACATTCATGGCTGTGGAATATCTCAGAGATCATTTTAATGAGAGAGTGCCCAATGCTAATTTGCGAGATGTTGGCAGATTATCTGTGGACAAGAAATCTCTGCAGGAGGTTGCTTAA 1074 0.4274 MAVQSSTSGEAQASKNVSYDNFFLWREFVWGAVAGAFGEGMMHPVDTVKTRLQSQAILNGIQNQKNILQMVRSVWQVDGLKGFYRGVTPGITGSLATGATYFGVIESTKKWIEDSHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTITSWSSVAVKDGIAIKPGTQIYGYYTGMFHAGCSIWKTQGLKGLYAGYLSTLARDVPFAGLMVMFYEGLKDVTKYVEQRWISSPNCHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYNGWLDAIRNIWATEGMKGMFRGSIPRITWYIPASALTFMAVEYLRDHFNERVPNANLRDVGRLSVDKKSLQEVA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2035 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Ssu1g2035 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Ssu1g2035 357 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 352 - -
Ssu1g2035 357 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 352 - -
Ssu1g2035 357 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Ssu1g2035 357 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085
Ssu1g2035 357 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085
Ssu1g2035 357 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
Ssu1g2035 357 Pfam Mitochondrial carrier protein 122 227 IPR018108 -
Ssu1g2035 357 Pfam Mitochondrial carrier protein 246 333 IPR018108 -
Ssu1g2035 357 Pfam Mitochondrial carrier protein 24 114 IPR018108 -
Ssu1g2035 357 Gene3D Mitochondrial carrier domain 4 170 IPR023395 -
Ssu1g2035 357 Gene3D Mitochondrial carrier domain 171 344 IPR023395 -
Ssu1g2035 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Ssu1g2035 357 SUPERFAMILY Mitochondrial carrier 24 327 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2035 Ssu-Chr1 57839065 57844110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2035 31 328 EF-hand Containing Proteins AT2G35800 27.090 2.06e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2035 - - gmx:100790921 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2035 1 57839065 57844110 Ssu1g2035 1 57839065 57844110 ECH