Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2021 ATGGATGTGGTAAATGATTTGCACATGGGGCCTCCAGCAACAACCAATTTGGGAGGTTCTTTAACTAGTACAGAGGATGTAAATGCACCGCAGAAGCAGAAAATGGTGAGTAAGAAGAGACCAGGTGATGCTGTTGAGCATGAAGGCCCTGATGACCGAGCAGTATATGACTTCTCTGATAAAACTGTGTGTGTTAAAACCTATGCAAGGAGAAAAATGGTTAATTCCAATTGTAGGAGAAACAGTGGTTACTCAAGTCCTGAAAATTGTAAAAGTGAACCAACTATTCAGGATCATCACGAGGACGATTCACACAAATTTTCTGATGGACCATTGAGAGTTGACTTGATGGATggagaaacaaaattttcaattgatcAAGTTACCTCACAAAGTGGAGCTGCAGCTGAGGAAATAAAGTCGAGCACTGACAACATTAATGAGCAAAGGTTTATGACTGCATCTTCTGCAGTAGACATTCCTGTGGAACAACTTGAAACAAATGGTAGACAGCTAGATTATACTGAAATTACAAGAAATGACCAGTGTTGTGCAGGTGATGTTTCTGATTTAAGCTTAGACACAGTAAGAGATGGTCATTTAGAGATTTCACAATTCTCACTAGAAAGAAGTGTTGCTGGCAACTCAAAGAATAAGCTTCTCATCCTTGATGTGAATGGACTGCTTGCTGATTTTGTCAGTGTCAGTCACCCTCGTAGAAGATATAGACCAGAACCAGAGCCAAATTTTTGTCTTAAAGGGAGAAAAGTCTACAAGAGGCCCTTCTGTGATGATTTTCTACAGTTTTGCTTTGACAGATTTCATGTCGGAGTATGGTCATCTAGAGCCAAGAGGAATGTTGATGAAGCAATCAAATTTCTTATGGGGAAATCTGCATCCAAACTACTCTTTTGTTGGAATCAGTCTCACTGTACTAGAACAGAATTCACTACTGTTGAGAATAGAGACAAGCCCCTTGTGTTGAAGGAACTTAGAAAGTTGTGGGAAAAGGAAGAACCTGGTCTACCATGGGAGAAGGGAGAGTTTAATGAGtcaaacacattattattgGATGACTCCCCTTACAAGGCACTAGTGAACCCTGTAAGCAAGCTCCCTTGTTTTGTTTTCCTTATATGCAATAAGCTTTACTTTCTTGTGTTATTATCATTTTTCCTCCTATTCTGTCACTTCACACATGCAATTTCTTTTCAGATTCATACGGCAATATTTCCTTATTCTTACCGGTACTACCACACCAAAGACAACGAGTTAGGACCAGGAGGTGATCTTCGGGTTTATCTAGAACGGCTGGCTATGGCCGAGAATGTGCAAAAGTACGTCTCGGACCATTCCTTTGGCCAACGGCACATAACAGAAACAAATCCATCCTGGCGTTACTATTGCAAAGTTATAGATTCAGTTAAAAGAAGCCGAAATGCTAGGCCCTCAAGACCACGTAGGGAGCTAACTGCTTACAGAACAATGCATGATAATAGCTGTTGA 1506 0.3977 MDVVNDLHMGPPATTNLGGSLTSTEDVNAPQKQKMVSKKRPGDAVEHEGPDDRAVYDFSDKTVCVKTYARRKMVNSNCRRNSGYSSPENCKSEPTIQDHHEDDSHKFSDGPLRVDLMDGETKFSIDQVTSQSGAAAEEIKSSTDNINEQRFMTASSAVDIPVEQLETNGRQLDYTEITRNDQCCAGDVSDLSLDTVRDGHLEISQFSLERSVAGNSKNKLLILDVNGLLADFVSVSHPRRRYRPEPEPNFCLKGRKVYKRPFCDDFLQFCFDRFHVGVWSSRAKRNVDEAIKFLMGKSASKLLFCWNQSHCTRTEFTTVENRDKPLVLKELRKLWEKEEPGLPWEKGEFNESNTLLLDDSPYKALVNPVSKLPCFVFLICNKLYFLVLLSFFLLFCHFTHAISFQIHTAIFPYSYRYYHTKDNELGPGGDLRVYLERLAMAENVQKYVSDHSFGQRHITETNPSWRYYCKVIDSVKRSRNARPSRPRRELTAYRTMHDNSC 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2021 501 MobiDBLite consensus disorder prediction 77 106 - -
Ssu1g2021 501 SMART forpap2 217 383 IPR004274 -
Ssu1g2021 501 MobiDBLite consensus disorder prediction 1 52 - -
Ssu1g2021 501 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 201 478 - -
Ssu1g2021 501 Gene3D - 193 390 IPR023214 -
Ssu1g2021 501 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 201 478 - -
Ssu1g2021 501 SUPERFAMILY HAD-like 216 389 IPR036412 -
Ssu1g2021 501 MobiDBLite consensus disorder prediction 77 92 - -
Ssu1g2021 501 MobiDBLite consensus disorder prediction 15 31 - -
Ssu1g2021 501 Pfam NLI interacting factor-like phosphatase 219 370 IPR004274 -
Ssu1g2021 501 ProSiteProfiles FCP1 homology domain profile. 214 398 IPR004274 -
Ssu1g2021 501 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2021 Ssu-Chr1 57334652 57337193 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2021 - - ccaj:109813331 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2021 1 57334652 57337193 Ssu1g2021 1 57334652 57337193 ECH