Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2017 atgaggtggGAAAAGGTGAAGGGAATAGGAGAGGAAGGACCAGGGAAGAGGTGGGGCCACACGTGTAACGCCGTTAAAGGTGGCAGACTTCTTTATCTCTTCGGCGGTTATGGTAAATTTAACTGTCAGACCAACCAAGTTCACGTCTTCGACACTCTGAGGCAGAGTTGGAGTGAACCAGTAATTAAAGGGCCTCCACCTACTCCTAGGGACAGCCATAGTTGCACTGTTGTTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGGACCAAGCTGCTAAATGATTTGTACATACTAGACACTTCTTCACATACATGGATTTTTCCTACTGTGAGAGGAGAAGCACCAGAGGCACGGGAGGGTCATGGTGCAGCACTTGTTGGTAAACGACTGCTTGTGTTTGGTGGTTGTGGGAGATCTGGAGATAATATTAGGGAGGTGTACTACAATGACCTTTACATATTGAATACAGAGACATTTGTTTGGAAGCGTGCTACAACATCGGGCACTCCACCATCCCCTCGTGATAGCCATACTTGCTCATCttggaaaaacaaaattattgtgATAGGTGGTGAAGATGAACATGATTATTATCTTTCGGATGTCCATATCCTAGATACTGATACTCTAATTTGGAGAGAACTGAATACGTCAGGCCAATCGTTGCTGCCTCGAGCTGGTCATTCTACAGTTTCTTTTGGCAAGAACTTGTTTGTTTTCGGGGGCTTTACAGATGCTCAAAGCCTATACAATGACCTGTATATGCTTGACATTgAGACTGGTGTGTGGCTGAAGATGACAACTACACCTAATGGTCCTTCTGCTAGATTTTCTGTAGCTGGCGATTGTTTAGACCCATATATGGGCGGTGTTCTTGTGTTTATTGGTGGTTGCAATAGAAGTCTTGAGGCCCTGGATGATATGTATTACCTATACACAGGGTTGGCACGGGAAAGTGAACAGAGACCAGACAAGTTATCCTTAAGGAAGCAATTGAAGCTGAAATGTCTAGAACAGAATCTCAATGTTGTCCAAAACCCAGTTCTGTGTGGATATGGAGTGGGTGCTGATAGCAACCAGCCCATGGCAATCTTGAACTATAGCCAACTAAGTAGACTAAATATCCCAGTAAATCAATCCCTGCCTCCTGGAAAGAAAACGTTTCAAGCCAAAGTTGCTGAAAGAATCTCAGCAGGATATAGTATTGAAACCGTTATTGATGGAAAGCCTCTTCATGGAATTCTGTTTACAAACAAACCACACACTCTTAATCCAGTTACTAATACTTCCAGTAGGAAAAGGACTGCTGGTGAAAGTGGTAGTGTTGTTTCAAATGGTATATATTCAAACAATGTAACATCTTCTAAAGTGCTCAAGCAGGATAGAATGGAAGATAGACAGGAATTATGGGGAGACAGTTCAGAATCTCATGAACGCCACAAGGAAGCCGATCCTACTGTCGTATCAAGTACCCCAACAACTGCTATCGAGTCCTTTAAGGTTTCTGTCAACCCAGAACCAGAAGCTGTTTCTTTGAATCGAAATGGTGATGAAAAAAATGACACACCAAAATCCTTGGTTGAGAGCTTGAAAAACGATGGATCCAATGATGTGATAAGTTCCATAGGTGAAGTTCAAATTGGTGATCAACTAAATGTGCCAGTTTCCAACTATAAGATTCCAAGACAAACGAGCAATGCACCAAACTGTAACACTGATGTCCTGAAACCTGCAGCAGCTGAGAGTGCTGTGTGTCTGCCAAATCAAGGTGTAACAGGGGATTGCACAACTCCAAGGACAGAAGGACACATGGAACCAGCAAAATTAACTTGA 1839 0.4247 MRWEKVKGIGEEGPGKRWGHTCNAVKGGRLLYLFGGYGKFNCQTNQVHVFDTLRQSWSEPVIKGPPPTPRDSHSCTVVGDNLFVFGGTDGTKLLNDLYILDTSSHTWIFPTVRGEAPEAREGHGAALVGKRLLVFGGCGRSGDNIREVYYNDLYILNTETFVWKRATTSGTPPSPRDSHTCSSWKNKIIVIGGEDEHDYYLSDVHILDTDTLIWRELNTSGQSLLPRAGHSTVSFGKNLFVFGGFTDAQSLYNDLYMLDIETGVWLKMTTTPNGPSARFSVAGDCLDPYMGGVLVFIGGCNRSLEALDDMYYLYTGLARESEQRPDKLSLRKQLKLKCLEQNLNVVQNPVLCGYGVGADSNQPMAILNYSQLSRLNIPVNQSLPPGKKTFQAKVAERISAGYSIETVIDGKPLHGILFTNKPHTLNPVTNTSSRKRTAGESGSVVSNGIYSNNVTSSKVLKQDRMEDRQELWGDSSESHERHKEADPTVVSSTPTTAIESFKVSVNPEPEAVSLNRNGDEKNDTPKSLVESLKNDGSNDVISSIGEVQIGDQLNVPVSNYKIPRQTSNAPNCNTDVLKPAAAESAVCLPNQGVTGDCTTPRTEGHMEPAKLT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2017 612 MobiDBLite consensus disorder prediction 460 487 - -
Ssu1g2017 612 SUPERFAMILY Galactose oxidase, central domain 5 218 IPR011043 -
Ssu1g2017 612 MobiDBLite consensus disorder prediction 456 493 - -
Ssu1g2017 612 Gene3D - 1 221 IPR015915 GO:0005515
Ssu1g2017 612 Gene3D - 222 327 IPR015915 GO:0005515
Ssu1g2017 612 SMART kelc_smart 30 80 IPR006652 GO:0005515
Ssu1g2017 612 SMART kelc_smart 187 237 IPR006652 GO:0005515
Ssu1g2017 612 SMART kelc_smart 81 130 IPR006652 GO:0005515
Ssu1g2017 612 Pfam Galactose oxidase, central domain 69 114 - -
Ssu1g2017 612 Pfam Galactose oxidase, central domain 226 275 - -
Ssu1g2017 612 Pfam Galactose oxidase, central domain 175 219 - -
Ssu1g2017 612 MobiDBLite consensus disorder prediction 590 612 - -
Ssu1g2017 612 Pfam Kelch motif 117 161 - -
Ssu1g2017 612 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 9 439 - -
Ssu1g2017 612 PANTHER KELCH REPEAT DOMAIN 9 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2017 Ssu-Chr1 57236633 57242774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2017 14 301 Acyl Lipid Metabolism Gene Families AT3G05420 28.105 5.47e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2017 - - gmx:100785267 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2017 1 57236633 57242774 Ssu1g2017 1 57236633 57242774 ECH