Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2015 ATGGATAACAGTAGCTCGGAGCAGACCGTGCAAGATGGCAAACTCTACAGGCACCTCAATTCTCTCATCGTCGCGCATCTTCGCGACAACAATCTCACTCAGGCTGCAAGTGCTGTTGCTTCAGCAACCATGACTCCACTGAATGTAGAAGCCCCACCGAACAGGCTTCTCGTCCTGGTTGCTAAGGGTCTTGCAGCGGAAAAAGACGACATCACAAGAGGCACTTCGGCTTCTCCCTTTCGCGATTTCGCCACGTCACTGCCCCTGCCTCACACAACAGCCGTTGATTTCAGCTCTGTGCCTGATATGAAAGGTTCCTCAAAGAGCTTCCCAAAGCATGAAACGCGACACCTTTCAGAACACAAGAATATTGCCAGATGTGCTAGGTTTAGTGCTGATGGAAGGTTTGTTGCCACTGGAAGTGCTGACACATCAATAAAGTTATTTGAGGTTTCAAAGATCAAGCAAATGCTGCTCCCAGAGGCAAAAGATGGTCCTGTGCGGCCTGTCATACGAACATATTATGATCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACGAATGCAAAGAGAGCATACTGGGTTATCCAGGATACACACAATGTCCGATCTGTATCTTTTCATCCCTCTGGGGACTTCCTGCTGGcagGGACTGATCATGCAATTCCACATTTGTATGATATAAATACCGTTCAGTGTTATCTGTCAGCAAATATCCCAGAGACTAGCCCTAATGGAGCCATAAACCAGGTCAGATATTCTTGCACAGGTGCCATGTATGTTACAGCATCTAAAGACGGTGCTATTCGGTTGTGGGATGGCATCACTGCCTCTTGTGTGCGCTCAATAACTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCAAAGGTTTGTTCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGGCTCTGGAAGATTAATCAAACAATATCTCGGAGCCATACATACCCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAATTGAGCAATGAGATTGTTATCTGGGATGCAATGACAACCGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCAATAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAAACTGTATAA 1296 0.4475 MDNSSSEQTVQDGKLYRHLNSLIVAHLRDNNLTQAASAVASATMTPLNVEAPPNRLLVLVAKGLAAEKDDITRGTSASPFRDFATSLPLPHTTAVDFSSVPDMKGSSKSFPKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRAYWVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTVQCYLSANIPETSPNGAINQVRYSCTGAMYVTASKDGAIRLWDGITASCVRSITGAHGTAEATSAIFTKDQRFVLSCGKDSTIKLWEVGSGRLIKQYLGAIHTQLRCQAIFNETEEFILSIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2015 431 CDD WD40 114 428 - -
Ssu1g2015 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Ssu1g2015 431 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 6 430 IPR044633 GO:0005848|GO:0031124
Ssu1g2015 431 SMART WD40_4 167 206 IPR001680 GO:0005515
Ssu1g2015 431 SMART WD40_4 299 340 IPR001680 GO:0005515
Ssu1g2015 431 SMART WD40_4 111 150 IPR001680 GO:0005515
Ssu1g2015 431 SMART WD40_4 212 250 IPR001680 GO:0005515
Ssu1g2015 431 SMART WD40_4 255 296 IPR001680 GO:0005515
Ssu1g2015 431 SMART WD40_4 388 428 IPR001680 GO:0005515
Ssu1g2015 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 159 IPR001680 GO:0005515
Ssu1g2015 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 349 IPR001680 GO:0005515
Ssu1g2015 431 Pfam WD domain, G-beta repeat 301 339 IPR001680 GO:0005515
Ssu1g2015 431 Pfam WD domain, G-beta repeat 171 206 IPR001680 GO:0005515
Ssu1g2015 431 Pfam WD domain, G-beta repeat 222 245 IPR001680 GO:0005515
Ssu1g2015 431 Pfam WD domain, G-beta repeat 269 296 IPR001680 GO:0005515
Ssu1g2015 431 Pfam WD domain, G-beta repeat 115 149 IPR001680 GO:0005515
Ssu1g2015 431 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Ssu1g2015 431 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Ssu1g2015 431 PRINTS G protein beta WD-40 repeat signature 193 207 IPR020472 -
Ssu1g2015 431 PRINTS G protein beta WD-40 repeat signature 283 297 IPR020472 -
Ssu1g2015 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Ssu1g2015 431 Gene3D - 263 431 IPR015943 GO:0005515
Ssu1g2015 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Ssu1g2015 431 SUPERFAMILY WD40 repeat-like 110 428 IPR036322 GO:0005515
Ssu1g2015 431 MobiDBLite consensus disorder prediction 98 117 - -
Ssu1g2015 431 Gene3D - 98 259 IPR015943 GO:0005515
Ssu1g2015 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 208 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2015 171 427 Miscellaneous Gene Families AT5G08390 20.930 3.08e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2015 K14406 - gmx:100809908 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2015 1 57188881 57193103 Ssu1g2015 1 57188881 57193103 ECH