Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2006 ATGCGGCGACGGGCCGCCGAGTTTCGGCGCCCGGTTCGGCGGCGGTTCTCTCATTGGATCTGGTTGCTCCTTGGCGCGTTCTCTCTCGCGGCTTTGGTTTTGTTCCTCGTGCAACACAATCACCGCGAAGATCGGGTCCAACACCCCCTTCTGGAGAGAAATGCCAAAGTTGAACATTTTGCTAAGAAGAGGTTGAATTTTactgaagaaattttaaatgcaACATCCTTTTCACGGCAATTAGCAGAGCAAATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTAGCCTGGGAGCTTAGCTCAAAGATTAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTGACCGTGGAGGAAGCTGAGCCAATCATTAAAGGCCTGTCTTCTCTAATTTTCAAGGCACAAGATGTCCATTATGATATTGCAACCACTATAGCGACAATGAAATCACATATTCAAGCACTTGAAGAGCGTGCGAATGCAGCAACTGTTCAAAGCACTGTGTTTGCTCAAATATCAGCTGAAGCACTACCCAAGAGTCTTCATTGCTTAAATGTGAAACTTATGGCTGATTGGCTAAAGATGCCATCCCTGCAAGGACTCTCACATGAGAGGAGAAACTCCCCCCGGCTCACAGATAACAATCTATATCATTTCTGCATTTTTTCAGATAATGTACTGGCTACATCTGTAGTTGTTAACTCTACAGTCATCAATGCTGACCATCCAAAACAGTTAGTCTTTCACATTGTTACTGATGTTATCAATTATGGAGCAATGCAAGCATGGTTCATCAGTAATGACTTTAAAGGGGCTACCTTAGACGTACAGAATATTGACGAATTTCATTGGTTGAATGAATCTTATTCTCCAATTGTCAAACAGCTACACAGTCCAGAATCACAAGCCTTTTATTTTGGAACTTATCAAAATGTAAATGTTGAGCCAAAATTGCAAAACCCCAAGTTTTTGTCTTTACTAAATCATCTTCGGTTTTACATCCCCGAGATTTATCCACAACTTGAGAAGGTTGTTTtccttgatgatgatgttgttgTCCAGAAAGACCTAACCCCACTTTTCTCACTGGATTTGCATGGAAATGTGAATGGTGCCGTTGAAACTTGTCTAGAGGCATTTCATCGGTACTACAAGTATCTCAACTTCTCAAATTCTATTATAAGCTCAAAGTTTGATCCACAGGCATGTGGATGGGCACTTGGCATGAATATTTTTGACTTGGTTGCATGGAGGAAAGCAAATGTGACTGCAAGGTATCATTATTGGCAGGAGCAGAATGCTGATGGGACACTCTGGAAGCTTGGTACGCTTCCACCTGCTCTTCTAAGTTTTTATGGTTTGACAGAACCACTTGACAGAAGATGGCATGTTTTGGGATTGGGTTATGACCTAAATATTGACAACCGCCTGATTGAAAGTGCAGCAGTTATTCACTTTAATGGGAACATGAAACCATGGCTGAAGTTAGCTATAGGCAGtGTCTTGAAATAG 1551 0.4152 MRRRAAEFRRPVRRRFSHWIWLLLGAFSLAALVLFLVQHNHREDRVQHPLLERNAKVEHFAKKRLNFTEEILNATSFSRQLAEQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGEPVTVEEAEPIIKGLSSLIFKAQDVHYDIATTIATMKSHIQALEERANAATVQSTVFAQISAEALPKSLHCLNVKLMADWLKMPSLQGLSHERRNSPRLTDNNLYHFCIFSDNVLATSVVVNSTVINADHPKQLVFHIVTDVINYGAMQAWFISNDFKGATLDVQNIDEFHWLNESYSPIVKQLHSPESQAFYFGTYQNVNVEPKLQNPKFLSLLNHLRFYIPEIYPQLEKVVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWALGMNIFDLVAWRKANVTARYHYWQEQNADGTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGSVLK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2006 516 CDD GT8_like_1 230 513 - -
Ssu1g2006 516 Coils Coil 158 178 - -
Ssu1g2006 516 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 513 IPR029993 GO:0047262
Ssu1g2006 516 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 511 IPR029044 -
Ssu1g2006 516 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 511 IPR029044 -
Ssu1g2006 516 Pfam Glycosyl transferase family 8 234 509 IPR002495 GO:0016757
Ssu1g2006 516 PANTHER HEXOSYLTRANSFERASE 3 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2006 Ssu-Chr1 56812495 56816635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2006 1 511 Glycosyltransferase AT2G20810 55.039 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2006 K13648 - gmx:100817381 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2006 1 56812495 56816635 Ssu1g2006 1 56812495 56816635 ECH