Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1996 ATGAAGGAGGCGTTGTTGGGTGGGGGAGAGAAGAGTGAGAGGAAGAGAGGGAGGGTGGTTTGGGAGAGGTTGATGATGATGGGGTTGAAGGGGgagagtaataataataataacaacaataagcTGAAGAATTCGGTGGTGTCGGTGAGGTCGTCGAGGATGAAGCTGTGGATGATACGCGCGACCACATCGGTGTTACTGTGGACCTGCGTTGTTCAGTTAACGGCGTTGGGGGACATGTGGGGGCCGAGGGTTTTGAAAGGCTGGCCGTCTTGTTTCACGCACGAATCCGCGCTCATTGAGTTGCCGTCCGCCCCGCCCAGAGTGCTCCCACCCAAGAGGGTTTATAAAAACAACGGTTACCTGATGGTGTCGTGCAATGGAGGACTGAACCAAATGAGAGCAGCGATATGTGACATGGTGGCGATTGCGAGGTATTTAAATGTGACGCTTATAGTTCCGGAATTGGATAAAGCGTCGTTCTGGGCTGACCCCAGTGAGTTCCAAGACATATTTGACGTGGATCATTTTATTACATCCTTGAGGGATGAGGTGCGGATATTGAAAGAGTTGCCTCCTAGACTCAAGACGAGAGTGGAAAATGGATTACTTTACAGCATGCCACCGATTAGTTGGTCTGATATATCATACTATAAGAACCAGATTCTACCTTTGATACAAAAGTACAAAGTTGTCCATTTAAATCGAACGGATGCTCGGCTGGCCAATAATGGCCAACCTTTGGACATTCAGAGGCTGCGTTGCAGAGTCAATTTTAGTGCTCTTAGATTTACTTCTCAGATTGAGGAGCTAGGCAGAAGGGTGATCAAGCTTCTTAGGCAAAATGGCCCAGTTCTTGTGCTTCATTTGAGGTATGAGATGGACATGCTGGCATTTTCTGGCTGTACACAAGGTTGCAACGGTGATGAGGTGGATGAATTGACAAGGATGAGATATGCTTATCCTTggtggaaagaaaaaataattaattctgaTTTGAAAAGAAAGGATGGTTTGTGTCCTTTAACACCTGAGGAGACTGCCCTTACGCTTAGAGCCCTTGACATCGATCAAAACATTCAAATCTACATTGCAGCTGGGGAAATATACGGTGGGGACAGAAGAATGGCAAGTCTTGCGAAGAACTATCCAAAATTGGTCAGAAAGGAAACACTGTTGGAACCATCTGACCTTCAGTTCTTCCAAAATCATTCCTCTCAGATGGCTGCATTGGATTACCTGGTCTCATTAGAGAGTGATATCTTTGTTCCTACATATGATGGAAATATGGCCAAAGTAGTTGAGGGCCATCGCAGATATCTTGGGTTCAAGAAGACGATTTTATTGAACAGAAAGCTCCTAGTTGATTTGATAGATCAATACAACAGTGGAGTATTGAACTGGGATGAATTCTCTTCAGCTGTGAAAGAAGCTCATGCTGATCGCATGGGTAGCGCAGCTAAAAGATTGGTAATCCCTGACAGACCCAAAGAAGAGGATTACTTCTATGCCAATCCAGAGGAATGTTTAGAACTGTCAGATGATATGTTGAGTAGTACGTGA 1563 0.4408 MKEALLGGGEKSERKRGRVVWERLMMMGLKGESNNNNNNNKLKNSVVSVRSSRMKLWMIRATTSVLLWTCVVQLTALGDMWGPRVLKGWPSCFTHESALIELPSAPPRVLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKASFWADPSEFQDIFDVDHFITSLRDEVRILKELPPRLKTRVENGLLYSMPPISWSDISYYKNQILPLIQKYKVVHLNRTDARLANNGQPLDIQRLRCRVNFSALRFTSQIEELGRRVIKLLRQNGPVLVLHLRYEMDMLAFSGCTQGCNGDEVDELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLRALDIDQNIQIYIAAGEIYGGDRRMASLAKNYPKLVRKETLLEPSDLQFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKKTILLNRKLLVDLIDQYNSGVLNWDEFSSAVKEAHADRMGSAAKRLVIPDRPKEEDYFYANPEECLELSDDMLSST 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1996 520 CDD O-FucT_plant 121 446 IPR024709 -
Ssu1g1996 520 PIRSF UCP009360 21 507 IPR024709 -
Ssu1g1996 520 PANTHER OS02G0726500 PROTEIN-RELATED 32 515 - -
Ssu1g1996 520 Pfam GDP-fucose protein O-fucosyltransferase 121 441 IPR019378 -
Ssu1g1996 520 PANTHER GDP-FUCOSE O-FUCOSYLTRANSFERASE-LIKE PROTEIN 32 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1996 Ssu-Chr1 56505254 56508112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1996 117 510 Miscellaneous Gene Families AT2G37980 49.747 5.56e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1996 K23280 - gmx:100778901 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1996 1 56505254 56508112 Ssu1g1996 1 56505254 56508112 ECH