Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1994 ATGAAGGTCCGGTCTCTGAAGCTGAGGGAGGCCCACGCCGCCAAGGGTGGCCGCGCGTCCTTCTGCTCCATCCTGTGGGACCAGCAAGCGCAGCGTTTGGTCACCGCCTCCTCTTCCGACGTTGCCATCTGCATTCACGACCCCCTTTTCCCCTCCGTCACTCCGAGAATCCTCCGCCACCACCGTGACGGCGTCACCGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCGTCGACCACTCCGTCAAGCTCTACAAGTTTCCCgGTGGAGAGTTCGAGACTAATATTACCAGGTTTACACTTCCAATACGTTCCCTAGCGTTTAACAAATCAGGGAGCATGTTGGCTGCGGCTGGTGATGATGAAGGTATCAAGCTTATAAACACAGTTGATGGTTCCATTGCGAGGGTTCTGAAAGGACATAAAGGGTCTGTCACTGGCTTGGCTTTCGATCCTAATGGCGAATACTTAGCTTCTCTGGATTCAACCGGAACTGTTATTTTGTGGGAACTTCACTCTGGGAGAATCGTTCATAACCTCAAAGGCATAGCTCCTGACACTGGGGTGGATGTTTCTACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGGCTGAGAAATGACGTGGTAATGTATGATAGGGACACTGCTGAGAAGTTGTTTTCTTTGAGAGGTGATCACATACAATCAATATGTTTCTTGTGTTGGTCACCAAATGGGAAGTATATTGCTACCTCTGGTTTAGACAAGCAGGTTCTAATCTGGGATGTTAATCGAAAGCAGGACATTGACAGACAGAAGTTTGATGAAAGAGTGTGTTGCATGGCGTGGAAGCCAATTGGGAATGCCTTGGCTGTTATGGATGTTATAGGGAAGTATGGTATTTGGGAGAATGTTATTCCTTCGTCTATGAAGTCTCCAACTGAGGATATACCTTTGCAATACAAGAGCAATGGGGTTCTTTTGTTTGATGAGGAGGATCCTGAAAATAGTGCAAGCGGAAGCTTGAGTGATATTGGTGAAAACAATAATGAGGAGTCTGAGCCATCTAGCAGGAAGAGATTGCGTAAACAGTCTTTGAGTGAGGAAAATTTAGGTGAGGATGGAGGAGAGGAAATTGCTTTGTATCCGAAGGTTGATTCTCACAGGAAACGAAATCGATCAGGCAAGGAAAATCTGGATAGTGGGAATATGGGATTTAGAAGCACCATGGTAACATCTAAGGCAAAGATGCAGGACGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGGAAAAGGCATTTCTTATGCTACAATATGCTTGGGTGTATAACCTCTATTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCACTTTGGATTTACAATGGCGGCATTAAATGAGAGTGGGGGCGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCCAATAATAGCGAGtggTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTGCTGCTTGGGTTGCCGCAATAACTAGTTTTAACTATCTTCGCATCTTTTCTGAGGGTGGTTTGCAGAGGCACATGATTTCGCTAGACGGGCCAGTGGTGACTGCATCCGGTTTTAAGGATAAGCTTGCAGTTGTCACTCATGCTTCTGATTGCCTTTCCTCAAATGATCAGATGCTAGAGTTTAGAGTATTTAATATTCCTCATGGGACCCAACCCCTTCGATGTCGCTTGCCATTATCTCCTGGTTCATCTCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCATATGATTCGAAGGGTGTGCTAAGATCATATACAAGCCAATTTGGTGGTAGCTGGATCCCACTCTTCAGTGCTATTAAAGAGAAGTCAGATGAAAGCTATTGGGTGACAGGGTTGAATGCAAGCAAGTTATTTTGTGTGGTATGCAAAAAGCCTGATGACTTCCCTCAGGTGATGCCTAAGCCAGTTCTCACTCTGTTGAGTCTTTCATTTCCTCTTGCTTCCTCTGATTTGGGATCTGAAGCCCATGAAAACGAGTTTATGATGAACAGCTTGCATCTCTTTGagATTCAGAGAAGAATGGAAGAAATGGCTTCTGTTGGTCTGGACACTACTTCACTTGATGATGATGCTTTCAATCTGGAAGCAGCACAAGATAAATGCATACTGAGGCTTATAGCATCCTGCTGCAACAGTGATAAGCTTGTGAGAGCTACTGAACTTGTGAAGCTTTTGTCTTTGGAAAAATCAATGAGAGGCGCAATAAAACTTGTTACTGCTCTGAAGCTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTACTTGATGAAGCCAAAAAAACTATGGAAACCAACGTCAAAGAGAACTGTGTTGCACCCGTTACAGCTGGTGCTCTTCATAGCGGAAGCAAGGCCTCCCCAACTCAAACTGAAACATTAAATGCAGTTACCATGTCATCATCACCAAACTTATCTGCtccatttttcaaaaagaaagacaaaacaCAAGAGGGAGCTATAGCTGGAATAAATAAAACCACAATGGTAAATGAAACTCTGAAGGTAAAGCAGACGGGGGATGAAACAAGTAACAAGGTGGGGGATATGCGTCAGGTGCAACAAACTCCTCATCCACATGATCCCTTTACGAAGTCGTCAAATAAGAATGGACTTAACAATTCAGAGACTAGTTTTGGACAATCAAATCGGCCGTCCAATCCATTTTTGAAGTCTACTATCAAGTGA 2874 0.4457 MKVRSLKLREAHAAKGGRASFCSILWDQQAQRLVTASSSDVAICIHDPLFPSVTPRILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGSVTGLAFDPNGEYLASLDSTGTVILWELHSGRIVHNLKGIAPDTGVDVSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHIQSICFLCWSPNGKYIATSGLDKQVLIWDVNRKQDIDRQKFDERVCCMAWKPIGNALAVMDVIGKYGIWENVIPSSMKSPTEDIPLQYKSNGVLLFDEEDPENSASGSLSDIGENNNEESEPSSRKRLRKQSLSEENLGEDGGEEIALYPKVDSHRKRNRSGKENLDSGNMGFRSTMVTSKAKMQDAFQPGSTPVQPGKRHFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALNESGGVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAITSFNYLRIFSEGGLQRHMISLDGPVVTASGFKDKLAVVTHASDCLSSNDQMLEFRVFNIPHGTQPLRCRLPLSPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGSWIPLFSAIKEKSDESYWVTGLNASKLFCVVCKKPDDFPQVMPKPVLTLLSLSFPLASSDLGSEAHENEFMMNSLHLFEIQRRMEEMASVGLDTTSLDDDAFNLEAAQDKCILRLIASCCNSDKLVRATELVKLLSLEKSMRGAIKLVTALKLPNLAERFSSILEERLLDEAKKTMETNVKENCVAPVTAGALHSGSKASPTQTETLNAVTMSSSPNLSAPFFKKKDKTQEGAIAGINKTTMVNETLKVKQTGDETSNKVGDMRQVQQTPHPHDPFTKSSNKNGLNNSETSFGQSNRPSNPFLKSTIK 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1994 957 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Ssu1g1994 957 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Ssu1g1994 957 MobiDBLite consensus disorder prediction 898 957 - -
Ssu1g1994 957 SUPERFAMILY WD40 repeat-like 18 306 IPR036322 GO:0005515
Ssu1g1994 957 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Ssu1g1994 957 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 938 - -
Ssu1g1994 957 MobiDBLite consensus disorder prediction 355 374 - -
Ssu1g1994 957 CDD WD40 15 296 - -
Ssu1g1994 957 Gene3D - 2 195 IPR015943 GO:0005515
Ssu1g1994 957 MobiDBLite consensus disorder prediction 336 409 - -
Ssu1g1994 957 Gene3D - 196 308 IPR015943 GO:0005515
Ssu1g1994 957 MobiDBLite consensus disorder prediction 383 401 - -
Ssu1g1994 957 MobiDBLite consensus disorder prediction 340 354 - -
Ssu1g1994 957 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Ssu1g1994 957 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Ssu1g1994 957 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Ssu1g1994 957 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Ssu1g1994 957 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Ssu1g1994 957 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Ssu1g1994 957 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Ssu1g1994 957 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Ssu1g1994 957 SMART WD40_4 7 47 IPR001680 GO:0005515
Ssu1g1994 957 SMART WD40_4 51 90 IPR001680 GO:0005515
Ssu1g1994 957 SMART WD40_4 177 223 IPR001680 GO:0005515
Ssu1g1994 957 SMART WD40_4 93 132 IPR001680 GO:0005515
Ssu1g1994 957 SMART WD40_4 135 174 IPR001680 GO:0005515
Ssu1g1994 957 SMART WD40_4 226 266 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1994 58 272 Miscellaneous Gene Families AT5G08390 22.581 2.31e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1994 K11274 - gmx:100809300 1667.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1994 1 56415636 56420843 Ssu1g1994 1 56415636 56420843 ECH