Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1981 ATGGCTTACAAATCGCTAAGCTCTATTACTGTGTTGGATGTTGAATCCCATGGAATTGCAAGAGAAGACGCTGCCACTCTCCACGAACGTCTCACGGAAATAGTTGGAATTCACGGAGATGATACCCCCGCCACGTGGCAGCACATCAGCAGCAGCATCCTAAATCCTGAACTTCCCTTCTCCTTACATCAGATGCTGTACTATGGTTGCTACAAGGATTACGGTCCCGACCCACCCGCTTGGATACCCGACCCGGAAAGTGCTGCTTTGACTAATGTTTGGCAGTTGCTAGAGAGGAGGGGCAAAGCGTTTCTGGGTTCGGCATATAAGGATCCGATTACAAGCTTTGATGATTTCCAGAAATTTTCAGTCTCAAACCCTGAGATATATTGGGAATCAGTGTTGGATGAAATGAACATATCATTTTCCAAACCACCTGAATGCATCTTACGTGATGGCCCCCCAGGGGAAGGCCCATACCCAAGTGGTCAATGGCTTCCTGGAGCATCCATTAATCCAGCACAGAATTGCTTAAATGTAAATGGCAAAAGAGGTTTGGATGATACAGTAATAATATGGCGTGAGGAACAACATGATGATCTCCCTCTACAAAGGATGACACTCGAGGAATTGCAAGAAGAAGTTTGGTTAGTTGCGTGTGCTCTCAAATCTCTGGGTCTGGAGAAAGGATCTGCAATTGCGATTGATATGCCAATGAATGTGAAGTCTGTGGTTATCTACCTAGCTATCGTTCTTGCAGGTTATGTTGTTGTATCGATTGCTGATAGTTTTGCAGCTAGTGAAATATCAACCAGGCTTAAAATATCAAAagcaaaagtcatatttacTCAGGATCTCATTATACGTGGTGACAAAAGTATCCCCCTTTACAGTAGAGTTGTGGATGCACTGTCACCTATGGCGGTAGTTATCCCTACCAAAGGATCTGAGTTTAGCATGAAACTGCGCAACGGTGACCTTTCGTGGCATGATTTTTTGGAGAAAGTTAGTAGTCTCAAAGGCAAGGAATTCATAGCTACAGAACAACCAGTAGAAACATTAACAAACATTCTCTTTTCTTCTGGAACAACAGGTGATCCAAAGGCCATTCCATGGACCAATATTGCTCCTCTAAAAGCTGCTGCAGATGCATGGTGCCACATGGACATTCGTAAAGGTGATGTAGTGTGCTGGCCCACTAATCTTGGATGGATGATGGGGCCATGGCTAGTATATGCATCATTGCTAAATGGAGCTTCAATGGCTTTATATATTGGATCCCCTCTTGGGTCTGGCTTTGCCAAGTTTGTACAGGATGCTAAAGTAACAATGCTTGGTGTTATTCCAAGTATTGTACGGAGTTGGAGAAGTGCAAATTCTACATCTGGCCATGATTGGTCTTCTATCCGTTGCTTTGGCTCCACTGGTGAAGCATCTAATGTGGATGAATACCTTTGGCTAATGGGGAGAGCTCTCTACAAGCCTATCATTGAATATTGTGGTGGTACAGAAATTGGGGGTGGATTTGTTTGTGGATCACTACTACAGGCTCAGTCATTAGCTGCTTTTAGCACACCAGCTATGTGCTGCAGTTTGTTTATTCTTGATGATGGTGGCCATCCTATTCCACAAAATGTTCCAGGAATAGGTGAGTTGGCTCTTGGACCCCTCATGCTTGGGGCATCAAATACACTGCTGAATGCTGACCATTATGGTGTCTATTTCAAAGGAATGCCTCTCTTGAATGGAAAGGTTTTACGGAGGCATGGAGATGTGTTTGAGCGTACTGCTAGAGGATACTATCATGCACATGGTCGTGCGGATGACACGATGAACCTTGGGGGAATCAAGCTGAGTTCGGTTGAGATTGAACGCATATGCAATGGAGTAGATAGCAATATTCTGGAAACAGCTGCAATAGGGGTACCACCTTCTGGTGGTGGGCCTGAGTTGTTGACTATAGCTGTTGTATTCAAGGATTCAAATAGCACAAAGCAAGATTTACACCAATTGAGGATGTCTTTTAATTCAGCTCTCCAAAAGAAACTAAATCCACTGTTCAGGGTTTCTCAAGTAGTAACACTGCCATCTCTTCCAAGGACGGCATCAAACAAGGTTATGAGAAGGGTTTTGCGTCAGCAGCTTACCGAACCTTCTAAAATATAA 2166 0.4372 MAYKSLSSITVLDVESHGIAREDAATLHERLTEIVGIHGDDTPATWQHISSSILNPELPFSLHQMLYYGCYKDYGPDPPAWIPDPESAALTNVWQLLERRGKAFLGSAYKDPITSFDDFQKFSVSNPEIYWESVLDEMNISFSKPPECILRDGPPGEGPYPSGQWLPGASINPAQNCLNVNGKRGLDDTVIIWREEQHDDLPLQRMTLEELQEEVWLVACALKSLGLEKGSAIAIDMPMNVKSVVIYLAIVLAGYVVVSIADSFAASEISTRLKISKAKVIFTQDLIIRGDKSIPLYSRVVDALSPMAVVIPTKGSEFSMKLRNGDLSWHDFLEKVSSLKGKEFIATEQPVETLTNILFSSGTTGDPKAIPWTNIAPLKAAADAWCHMDIRKGDVVCWPTNLGWMMGPWLVYASLLNGASMALYIGSPLGSGFAKFVQDAKVTMLGVIPSIVRSWRSANSTSGHDWSSIRCFGSTGEASNVDEYLWLMGRALYKPIIEYCGGTEIGGGFVCGSLLQAQSLAAFSTPAMCCSLFILDDGGHPIPQNVPGIGELALGPLMLGASNTLLNADHYGVYFKGMPLLNGKVLRRHGDVFERTARGYYHAHGRADDTMNLGGIKLSSVEIERICNGVDSNILETAAIGVPPSGGGPELLTIAVVFKDSNSTKQDLHQLRMSFNSALQKKLNPLFRVSQVVTLPSLPRTASNKVMRRVLRQQLTEPSKI 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1981 721 SUPERFAMILY Acetyl-CoA synthetase-like 118 716 - -
Ssu1g1981 721 Gene3D - 609 720 IPR045851 -
Ssu1g1981 721 Gene3D - 102 608 IPR042099 -
Ssu1g1981 721 ProSitePatterns Putative AMP-binding domain signature. 357 368 IPR020845 -
Ssu1g1981 721 Pfam AMP-binding enzyme 201 613 IPR000873 -
Ssu1g1981 721 PANTHER ACYL-ACTIVATING ENZYME 17, PEROXISOMAL-RELATED 3 717 - -
Ssu1g1981 721 PANTHER ACYL-ACTIVATING ENZYME 17, PEROXISOMAL-RELATED 3 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1981 Ssu-Chr1 55621210 55634261 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1981 1 587 Acyl Lipid Metabolism Gene Families AT5G23050 67.857 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1981 - - gmx:100779628 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1981 1 55621210 55634261 Ssu1g1981 1 55621210 55634261 ECH