Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1974 ATGAATACTGTCACGGCTAGAAGCTCTCAAGAAATGTCCTCCAAGAGGCACTTTCACTGGACAAACAAGGTTGGTACTGAAGATGGTGAAGTTCCCACTTCAGAATCTTTCTCAACACTCATCCAGGAGGAGAAAAAAGAGGATGACAAGGTTGTTGCCCCTGAGGCTCCAGCACCTGCGGCCTCAGCACATGCCACAAGGAGGAAGCTGCAGGCAGTGGCAGTCTCCAGGATTCGCTCTGTTCTCACTGTGTTCAACAAGAACCGTTTGAACTCATCTTCTGGCCTTGGTTCTCGTGTAGTTGGCACCCTCTTTGGATATAGACGAGGGCATGTACATTTTGCATTTCAAAAGGACCCCGCTTCCCAGCCAGCCTTCCTGATCGAGCTTGCAACACCAATCAGTGGTTTGGTTCGTGAAATGGCATCCGGGTTGGTTAGAATTGCCCTGGAATGTGATAAGGAGAAGGAGGCAGAGAAGAAGTCTGTGAGGTTGCTGGAAGAGCCTGTGTGGAGGACATATTGCAACGGCAAGAAGTGTGGTTTTGCTACCAGAAGAGAGTGTGGACCAAAGGATTGGGATGTCCTCAAAGCCGTGGAGCCAATTTCAATGGGTGCAGGTGTTTTGCCAGGAAATAATAGTGGAGCTGAAGCAGGGTCAGAGGGTGAAATCATGTACATGAGGGCCAAGTTTGAGAGAATTGTTGGGTCCAGGGACTCTGAAGCTTTCTACATGATGAATCCTGATAGCAATGGAGCTCCTGAGCTCAGCGTCTACTTGCTTAGAGTCTAG 792 0.4924 MNTVTARSSQEMSSKRHFHWTNKVGTEDGEVPTSESFSTLIQEEKKEDDKVVAPEAPAPAASAHATRRKLQAVAVSRIRSVLTVFNKNRLNSSSGLGSRVVGTLFGYRRGHVHFAFQKDPASQPAFLIELATPISGLVREMASGLVRIALECDKEKEAEKKSVRLLEEPVWRTYCNGKKCGFATRRECGPKDWDVLKAVEPISMGAGVLPGNNSGAEAGSEGEIMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSVYLLRV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1974 263 Pfam Protein of unknown function, DUF617 100 262 IPR006460 GO:0010274
Ssu1g1974 263 MobiDBLite consensus disorder prediction 1 51 - -
Ssu1g1974 263 PANTHER DUF617 FAMILY PROTEIN 5 263 - -
Ssu1g1974 263 PANTHER PROTEIN MIZU-KUSSEI 1 5 263 IPR006460 GO:0010274
Ssu1g1974 263 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 100 263 IPR006460 GO:0010274
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1974 Ssu-Chr1 55434154 55434945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1974 - - gmx:100792218 442.195