Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1973 ATGCCGGTTTCAACTCGGTCCCACACGATGAACGAGTCGAACCCAGAGGAGCACCCACACGATGCCTTAAAGGAGAAGATGAAATCGCTGTTGTCGTTGTACGAGCAGCACAAGCAGAAGCACGGCGCCGCAGCAGCTCCCAAGAACCCTTCTTCGAGGCCTTTTCAGAAGGAAAACTTGGCACCTGCGGAAAGGGAGAAAAACGGGACCCGCATTCTCGTGTTCGTGAGGGTGAGGCCGTTGGcgaagaaggagaaggaagcGGGTGCACGGTGCTGCGTCAGAATCGTCGATCGCCGTGACGTTTATCTAACGGAGCTTGCCTCCGAGAAGGATTACCTCAGGCTGAAGAGGCTTCGGGGACGCCACTTTGCCTTCGACGCTTCGTTTCCGGATTCGGCTACTCAGCAAGAAGTTTATTCCACCACAACCTCAGAACTTGTGGAAGCAGTTCTGCAAGGGAGGAATGGGTCAGTTTTCTGTTATGGTGCAACTGGAGCTGGAAAAACTTACACAATGCTTGGTACAGTGGAGAGTCCTGGTGTGATGGTGTTGGCAATTAAGGATCTGTTCAGTAAAATCAGGATGAGAAGTTGTGATGGAAACCATGCAGTTCATCTGTCCTATCTTGAGGTTTATAATGAAACTGTCAGGGATTTGCTTTCACCTGGAAGACCTCTGATTCTCAGAGAAGATAAACAGGGGATTGTTGCAGCAGGTCTTACACAATACCGAGCTTATTCCACTGatgaaGTGATGGCATTGCTTCAACAAGGAAATCAGAATAGAACCACAGAACCAACTTGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAGgttgtggttgagtaccGAGTTAGAGATGCTGCAatgaatattattaacaaaatggGCAAGCTCTCACTGATTGATCTTGCAGGGTCAGAGAGAGCTCTTGCCACAGATCAAAGAACAGTTAGATCTCTTGAGGGTGCCAACATAAATCGGTCTCTTCTGGCACTAAGCAGCTGCATTAATGCTCTTGTAGAAGGCAAGAAGCACATACCATATCGAAATTCAAAACTCACTCAACTTCTCAAGGACTCATTAGGAGGAACTTGCAACACTATCATGATTGCAAACATAAGCCCAAGTAACCTCTCATTTGGTGAAACTCAGAACACCCTTCATTGGGCTGACAGAGCCAAGGAGATTCGAACAAAGGCAACTAATGCAAATGAGGATATATTGCTAATGCCTGAGACAGAAACAGAGCAGACCAAGCTAGTAATCGAGCTGCAAAAGGAGAATCGCGAATTGCGAATGCATCTAGCACGGCAGCACCAGAAGCTTATGACACTCCAAGCACAGTCCTTGGCCCCCCCAACACCACCTTCAGCTACATCTCTTCTTTCCACTCCTCCAACTTCTGCCCCACCAAATGAAAAACGAAGGACCAGACCCTCTTTCTTAGCCGCAACTCATCTTACTCCAGAGACCAAGAACAAGGGAGATGAGGTAGCTGTCACAGTCAGAACACTTCAACAAAGAGTAAAAGCCTTGGAGGCAGAGCTGGAGAGAGTGAAAAGGGATCACAACATGCAGCTAAAGCAGAAAGATGATGTCATTCGTGAGCTTTCACAAAAGGGTGGGAAAAAAGTGGTAGCAGCAAGGGCTAGTCTACGGCCAAAGGAGGCAAACACTGGAGAGTTGAAGAGTCCAAGCCATCGTTTTCGGTCACCAGTACTAACTGCAAAGAAACGAAGCTTTTGGGACATAACTACTGCTAACAGCCCATCAGTTACCACATTGAATGGGAGAAAAACTAGAAGTTATGTCATTTCTGAATCTACTGCACATCCATCTATGCTTCTTCAGCCTGGATTTGCTCGACAAAAGGGCGATATTTAA 1899 0.4581 MPVSTRSHTMNESNPEEHPHDALKEKMKSLLSLYEQHKQKHGAAAAPKNPSSRPFQKENLAPAEREKNGTRILVFVRVRPLAKKEKEAGARCCVRIVDRRDVYLTELASEKDYLRLKRLRGRHFAFDASFPDSATQQEVYSTTTSELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVESPGVMVLAIKDLFSKIRMRSCDGNHAVHLSYLEVYNETVRDLLSPGRPLILREDKQGIVAAGLTQYRAYSTDEVMALLQQGNQNRTTEPTCANETSSRSHAILQVVVEYRVRDAAMNIINKMGKLSLIDLAGSERALATDQRTVRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGTCNTIMIANISPSNLSFGETQNTLHWADRAKEIRTKATNANEDILLMPETETEQTKLVIELQKENRELRMHLARQHQKLMTLQAQSLAPPTPPSATSLLSTPPTSAPPNEKRRTRPSFLAATHLTPETKNKGDEVAVTVRTLQQRVKALEAELERVKRDHNMQLKQKDDVIRELSQKGGKKVVAARASLRPKEANTGELKSPSHRFRSPVLTAKKRSFWDITTANSPSVTTLNGRKTRSYVISESTAHPSMLLQPGFARQKGDI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1973 632 Gene3D Kinesin motor domain 62 407 IPR036961 -
Ssu1g1973 632 Coils Coil 507 534 - -
Ssu1g1973 632 PRINTS Kinesin heavy chain signature 154 175 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1973 632 PRINTS Kinesin heavy chain signature 268 285 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1973 632 PRINTS Kinesin heavy chain signature 351 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1973 632 PRINTS Kinesin heavy chain signature 302 320 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1973 632 MobiDBLite consensus disorder prediction 453 483 - -
Ssu1g1973 632 Coils Coil 426 446 - -
Ssu1g1973 632 Coils Coil 20 40 - -
Ssu1g1973 632 MobiDBLite consensus disorder prediction 453 479 - -
Ssu1g1973 632 PANTHER KINESIN-RELATED 53 625 IPR027640 GO:0003777|GO:0007018
Ssu1g1973 632 SMART kinesin_4 69 409 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1973 632 ProSitePatterns Kinesin motor domain signature. 301 312 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu1g1973 632 MobiDBLite consensus disorder prediction 11 35 - -
Ssu1g1973 632 MobiDBLite consensus disorder prediction 1 63 - -
Ssu1g1973 632 PANTHER KINESIN-LIKE PROTEIN 53 625 - -
Ssu1g1973 632 ProSiteProfiles Kinesin motor domain profile. 71 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1973 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 445 IPR027417 -
Ssu1g1973 632 Pfam Kinesin motor domain 77 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1973 Ssu-Chr1 55413442 55418203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1973 72 453 Miscellaneous Gene Families AT4G39050 37.949 1.32e-58 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1973 K10401 - gmx:100815524 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1973 1 55413442 55418203 Ssu1g1973 1 55413442 55418203 ECH