Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1970 ATGGGTATTTCATTAACCCTTTGGTGTGCactattaacaattaatattccTGTATCCCACCCTGCCTCTTCTGTGCCCATACTCAGCATCCCACTATACCACAGGGCAATGCTGAATGACACATTCATGCCCCATGCAAGAGTTCATTATCCTAACACAGAAGCCACAGCAGATATATACCCTGCGGATGATGCCTACGCAATGTTCTTGTGGGTTGGTACCCCAGTGCAGATTGTGTTTGTTACGATTGACACAGGGAGCCCCATCACATGGTTCCAGTGCGACCCTTGCAGCAACTGTTACCCCATGCAGCGCGCTCCCTTCAACACACGCGCGTCAAGCTCCTTCAGGGAACTTGGGTGCTACTCCGACGCGTGCCTGATCCCAACGATGAGGGACATTTTCGGAAACTGCACTGCATGGACTTGTAGGTACAATGTGGAATATGCCAGTGCCAAGGAATCTCAATCTCGCTCCTTTGGTGTGATGGTCACTGACACCCTCAACTTTGAGCACTCGAATGTTCAAGCCAAGGACCTCATCATGGGGTGTGGGGATTCGTATGAGGGTCCGTTTAGGACTCAGTTCTCGGGAGTTTTTGGTCTCGGACGTGGTCCACTTTCAGTGCAAAGTCAACTTCATGCAAAGGCCTTTTCATTTTGCATAGTGAGTCTTGGATCAGAAAAAGCCTCTTCTCTAAAGTTTTATGATACACCGCCTAAAGTAGACCAACATGGTAACGATTCCATTATGGTCCCCTTGAGCGAGAACAGTAGATACCCTTACTATTACTTTGTGCAGTTTGTGGGAATAGGCATTAATGGGTTCATGTTGGATATTCAATCTAGAGTTTGGGGTTATGGGCTGAACTATGATGGTGGGGTTGTTATAGATACGGGAACAGTACTAACCTATTTGCCACGGGATGCGTATAGTGTGTTCAGGTCAGAGATACGTACAACAGATGGTAACCTTACGAAGAAGCCAGGATATGATGAGTTAGAGTTTTGTTATGAAGAAGGTCCAACTAATGTgtatccaaccattgaattttaCTTTGAGAATGGCAATATTGCGGGTGAAAATTTTGTGTCTTTCAAGTTGGACAACAACCAATTGCTTTTCAGAGCAGAAGAGGGAACAGTTTGTCTACCGTTTGCAGAAGGAAAAAATTCTGCACTTACTGTGATTGGCAGTAACCACCTCCAAGGAACTCTGTTAACGTATGATCTGGTTAATGAAATCCTTGTCTTCACATATAATAAGTGTTAG 1272 0.4418 MGISLTLWCALLTINIPVSHPASSVPILSIPLYHRAMLNDTFMPHARVHYPNTEATADIYPADDAYAMFLWVGTPVQIVFVTIDTGSPITWFQCDPCSNCYPMQRAPFNTRASSSFRELGCYSDACLIPTMRDIFGNCTAWTCRYNVEYASAKESQSRSFGVMVTDTLNFEHSNVQAKDLIMGCGDSYEGPFRTQFSGVFGLGRGPLSVQSQLHAKAFSFCIVSLGSEKASSLKFYDTPPKVDQHGNDSIMVPLSENSRYPYYYFVQFVGIGINGFMLDIQSRVWGYGLNYDGGVVIDTGTVLTYLPRDAYSVFRSEIRTTDGNLTKKPGYDELEFCYEEGPTNVYPTIEFYFENGNIAGENFVSFKLDNNQLLFRAEEGTVCLPFAEGKNSALTVIGSNHLQGTLLTYDLVNEILVFTYNKC 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1970 423 Gene3D Acid Proteases 236 423 IPR021109 -
Ssu1g1970 423 Gene3D Acid Proteases 47 235 IPR021109 -
Ssu1g1970 423 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 60 412 - -
Ssu1g1970 423 SUPERFAMILY Acid proteases 62 423 IPR021109 -
Ssu1g1970 423 ProSiteProfiles Peptidase family A1 domain profile. 66 419 IPR033121 -
Ssu1g1970 423 Pfam Xylanase inhibitor C-terminal 264 419 IPR032799 -
Ssu1g1970 423 PRINTS Pepsin (A1) aspartic protease family signature 72 92 IPR001461 GO:0004190|GO:0006508
Ssu1g1970 423 PRINTS Pepsin (A1) aspartic protease family signature 295 306 IPR001461 GO:0004190|GO:0006508
Ssu1g1970 423 PRINTS Pepsin (A1) aspartic protease family signature 395 410 IPR001461 GO:0004190|GO:0006508
Ssu1g1970 423 Pfam Xylanase inhibitor N-terminal 66 233 IPR032861 -
Ssu1g1970 423 PANTHER OS07G0603500 PROTEIN-RELATED 60 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1970 Ssu-Chr1 55376316 55377587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1970 66 423 Miscellaneous Gene Families AT1G44130 24.010 6.05e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1970 - K22683 aprc:113874191 694.115