Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1963 ATGGTCGATCACTACAACAAGCTAGTTAAACTAGCAGCGAGGGCTTTCTACGATGATCTGACGAGTAAAGGAGAGAATCAACCCAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTGGTGATTCTCGATGCTCTCACAAGGCGACAATGGGTCAGAGAAGAAGATTTGgcaaaagatctcaaattacaCACAAAACAACTCCGTCGAACTCTGCGGTTTTTTGAAGAGGAGAAGATCATTGCTCGAGAATATAGGAGAGAGACAGCAAAAGGTGCAAAAATGTATAGTGCTGCTACAGCTGCTACAGTTGATGTTCAACTGACTGGAAAAGAGGGAGAAGAAAAGGTCAAGTTGCACACGCACTCTTACTGTTGTTTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATACATCGCATGAAGAAGCTGCTGAAAGATGAATTGGAGAACAAGAACACAATTGAGGAATATATCTGTCTAAAATGCGGAAAAAGataCAATGCTTTGGATGCATTGCGGTTAGTATCTTTTGAAGATGACGATTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAGTGACAAGTTTGCTGCTCAAGAAGGGGGTGATGGAGATGATAATGCAAGAAGACGGCGGCATGAAAAGTTAAAAGACATGCTTCAGAAGATGGagGTACAGCTCAAGCCTTTAATGGACCAACTCAGCCGGGTGAAAGATTTGCCTGTTCCAGAATTTGGCAGTCTTCAAGCATGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCTGCCAATGGTGATATTGCTGGTGATTCTAAAATTTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGAGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGGCAACAGAGAGGATGTCAAGTCTGAAGCTGAAAGTACATCTCTAAAGGTTTTGCCACCATGGATGATTAAATCAGGGATGGTTCTTACAAAGGAACAACGTGGAGAGCTGAAGGAGGAAATAAAGATGGATGGTACTTCAACTTCCACATCAGCACAGTACTCAGATGACAAGAAATCAACAGATGAGTATATTAAAGCTTATTATGCTGCTTTGCTTAAACAACAACATGAATTGGAAGCTGTTAGAAAACAAGAATCATCAAATACACTCACTGCAAATGATCCTTCTAGCAGTGCTTCTAATCGTCAAGTTGGCATGAAATCAAAACTTGAGGAAGATGTTGATGGTACTGAATGGGAGGAGGCTCCAGTTGCAGGTACTGGAAATGAAAATTACAAGGTCAATGATTTGAATGTTCAAGCTGATGATGCTCCAGCTGATGACGATGAAGATGTGGACTGGGAGGAAGGTTGA 1386 0.4134 MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIIAREYRRETAKGAKMYSAATAATVDVQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELENKNTIEEYICLKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVESDKFAAQEGGDGDDNARRRRHEKLKDMLQKMEVQLKPLMDQLSRVKDLPVPEFGSLQAWEARASAMGRAANGDIAGDSKISQLGYNGAPMPYSGDTKVVVDFNGTEGNREDVKSEAESTSLKVLPPWMIKSGMVLTKEQRGELKEEIKMDGTSTSTSAQYSDDKKSTDEYIKAYYAALLKQQHELEAVRKQESSNTLTANDPSSSASNRQVGMKSKLEEDVDGTEWEEAPVAGTGNENYKVNDLNVQADDAPADDDEDVDWEEG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1963 461 SUPERFAMILY Zinc beta-ribbon 149 198 - -
Ssu1g1963 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 206 IPR013083 -
Ssu1g1963 461 MobiDBLite consensus disorder prediction 446 461 - -
Ssu1g1963 461 MobiDBLite consensus disorder prediction 388 409 - -
Ssu1g1963 461 Coils Coil 58 78 - -
Ssu1g1963 461 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT 8 441 IPR039997 -
Ssu1g1963 461 MobiDBLite consensus disorder prediction 384 461 - -
Ssu1g1963 461 SMART tfiie3 37 208 IPR002853 GO:0006367
Ssu1g1963 461 MobiDBLite consensus disorder prediction 337 361 - -
Ssu1g1963 461 Pfam TFIIE alpha subunit 39 154 IPR024550 -
Ssu1g1963 461 ProSiteProfiles TFE/IIEalpha-type HTH domain profile. 5 137 IPR017919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1963 Ssu-Chr1 55171939 55200734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1963 K03136 - gmx:100799341 807.749