Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1961 ATGAGTAGGTCTCCTTCGTTTTCAGTGAAAACAGAAGTGAGTCCGAGTGTTGATTCCGAATCACTGCAACGATGGGTTGTTGCCTTTTGTGCTATACGGTTTGATCTTGAACAAGGTCAGCTTGTAGAAGAGTGTTATCCACAGGGTTGTCTTTCCCATGATGAGGAGCTTGAAATTGCTTATAGTTCCTTTCCTGATTCCGTTTCACAGCACAAAAACCGCTCCAGCATTCACGATTGTATCTTCTTTTTCCGAATTCGCAGGCAACTTAAGAAGTCCTTAGATGAAAAGGATGTTACTGATAGTAGCAATGGTTCTAAATTCTTGTATGGTTATGTGTTTAATAGGCAGAGACACGACGAGAGGCTAAAGCGAGGTGGGGAGCAGAAGTCTGTGGTCATTTTGTCTTACAGTCCTTATTCAAGTGTGTTTAGACCTTTGTTGCAAATTGTAGGTCCTTTGTTTTTTGACATTGGTAAGAAAGCATTGGAGCATATTGCTGCTTATGTTTCAAAATGGCCCGCTCCTGTTCCTGGTAAGGTAATGGATCTTCCTATTGGAAATGCAACTCTTAAAGTGAATTTGCCACCTGCTCACAGTTTGCCTGTAGAAAGTGGAGTGTCTTTTGAAGAGGGTGCTTCTTCTGTGGCACCTTTTGTTCCTAATAATCAGTCTGTTCCACATGGTCTTTTTCATGATTCAGATCTTTTTGGTTCGTTCCGTGGGATTTTGTTGCAGCTTTGGCTGTTGTGGGAGTTGTTACTCATTGGTGAACCAATGCTTATCATTGCCCCCACACCTCCCCAATGTTGTGAGGCTGTAGCTAGTCTCGTGAGTTTGGTTGCTCCATTACTTTGTAGTGTTGATTTCCGGCCTTATTTTACCATTCATGACCTGGTGTTTGCACACTTAAACTCAATCCAAGAAGGTGAAGCTTTCCCCCCAATGATTTTAGGGGTGACAAACCTTTTTTTCCTCAAAGCACTGCGTAACATCCGGCACATTGTCTCGGTTGGAAGTCCTCCTCCTAATTTGAACAGGCTTGCCCTTACAACTAGGTCTTCTACCGGCAGACCTGAAGGTCTTGGGCTTCAACAACTTTCCCTAAAGAAGTTCTCGCCTTCGAGTTTATTGAGTGCAGTTAGGCTGCGGAGAGATGGTCCTCTTTGTCTCATGACAGAACATAAGGAAGCCATTTGGAGCGCCTATTCTGCCACAACAAAGCCAGATACTTCTATCTTAAATAGGCTTATAGATGCTGGGGTATCACCAAGAGTTGAGGAGTCAATGTCTGTTGTGAACAATGAGATATTACGGAGACATTTCCTGGAGCTCACTACAAACTTTCTGGCTCCTTTTAGCCCATATTTCAGGACTTCAACACCATCAGAAGGATCTTCTCCTTATGAAGACCCTTCTTCTCTATCTCCATTCAATGCAGATGAATTTCTAGCAAGTTTATCAGCAAGAGGTCCGGGGAAGTTTATATTAAAGCGAATGAGATCTAACTGGCTTGAGTTATACAGGCGATTCCTGAATGGACCCAACTTTATGCCATGGTTTCAGAGAAGGCGTGCTGTTGCTGAACAAGAACAAGATAGATTATGGAAGCAAGCAAGAATGAAAAATGACATACAACATCTTATTTCTAGACTGTCTGAATTGGAAATTGTGGATTCCTTCAATGTCATAGAGAGACTTCTCCTCAGAGAGATACAGCTGCAGCAATCTGGAAAGGGTGGCGTTGATTCGATGGCAACCTGTCAAAAACTAAAGGGAGACCTTCAGGCTGTTTTCAATGTGCTTTCAAAGGACATGCAACAACTAATGCTTTCAAATCCTGAAAGGGCATCACTTCTTCAAGGAAGTCCAGAGTCGACAAAACTTCCAGGCCATCCGTTCATACAAGTTGCGGTCGTGTCTTCTACATCACCTAGGTAA 1941 0.4297 MSRSPSFSVKTEVSPSVDSESLQRWVVAFCAIRFDLEQGQLVEECYPQGCLSHDEELEIAYSSFPDSVSQHKNRSSIHDCIFFFRIRRQLKKSLDEKDVTDSSNGSKFLYGYVFNRQRHDERLKRGGEQKSVVILSYSPYSSVFRPLLQIVGPLFFDIGKKALEHIAAYVSKWPAPVPGKVMDLPIGNATLKVNLPPAHSLPVESGVSFEEGASSVAPFVPNNQSVPHGLFHDSDLFGSFRGILLQLWLLWELLLIGEPMLIIAPTPPQCCEAVASLVSLVAPLLCSVDFRPYFTIHDLVFAHLNSIQEGEAFPPMILGVTNLFFLKALRNIRHIVSVGSPPPNLNRLALTTRSSTGRPEGLGLQQLSLKKFSPSSLLSAVRLRRDGPLCLMTEHKEAIWSAYSATTKPDTSILNRLIDAGVSPRVEESMSVVNNEILRRHFLELTTNFLAPFSPYFRTSTPSEGSSPYEDPSSLSPFNADEFLASLSARGPGKFILKRMRSNWLELYRRFLNGPNFMPWFQRRRAVAEQEQDRLWKQARMKNDIQHLISRLSELEIVDSFNVIERLLLREIQLQQSGKGGVDSMATCQKLKGDLQAVFNVLSKDMQQLMLSNPERASLLQGSPESTKLPGHPFIQVAVVSSTSPR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1961 646 ProSiteProfiles Tripartite DENN domain profile. 27 522 IPR037516 -
Ssu1g1961 646 Pfam Stabilization of polarity axis 244 326 - -
Ssu1g1961 646 PANTHER LD41638P 1 616 - -
Ssu1g1961 646 PANTHER UNCHARACTERIZED 1 616 IPR024224 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1961 Ssu-Chr1 54885624 54894160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1961 - - gmx:100782429 1139.41