Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1960 ATGGCTCCAAATTGTGGGCACCTAGTGGCATTCCTTCTCGTCTTCTTAACTGTGGTCTCCAGTGGCTCTGCTTGGGTTGGCGTGAACTGGGGAACCATGGCAACCCACCAACTTCCACCCGAGAAGGTGGTGAGGATGCTCAAGGAAAATGGGTTCACCAAATTGAAGCTGTTTGAAGCCGATGAGTTGATTATGGCAGCTCTGATGGGGACTGGTATCGAAGTCATGGTGGCAATACCCAACAACTTGTTGGACAAGATAAGTAACAGTCCTAAGGCTGCAGATTCTTGGGTCAATGATAATGTCACCAGTTACTTGTTCACTGGTGGTGTCAAAATCAAGTATGTTGCCGTGGGTAATGAGCCTTTCCTTAAAGCATATAATGGCACCTTTGCAAAGAAAATGTTGCCAGCCCTTACGAATATACAGAGATCACTTAATAATGCGAGGTTGGGTTCAAAGGTCAAAGTCACTGTTCCATTCAATGCTGACATTTACTATTCACCTGATTCAAATCCGGTGCCATCAGCTGGTGACTTCAGGCCTGAAGTGCGAGACCTCACTATTGAAATAATCCAATTCTTATATTCATACAATGCACCTTTTACAGTCAACATCTACCCTTTCCTTAGTCTTTATGGCAACGAAGATTTCCCTtttgattttgcattttttgaTGGAAGTAGCAAGCCTCTTAGGGATGGTAAGGCACTTTACACCAATGTGTTTGATGCAAATCTTGACACACTTCTGTGGGCTTTAGACAAGGCAGGATATCCTGACATGAAGGTTATAATTGGAGAAATTGGGTGGCCAACTGATGGTGATAAGAATGCTAATGCCAAGAATGCAAAGAGGTTCAACATGGGTTTGCTTAAACATGCTCTGAGTGGAAAGGGTACCCCTAAAAGGAAAGGCACAGTTGACTTGTTTCTATTCAGCCTCATTGATGAGAACACTAAAAGTGTTGCCCCTGGGAACTTTGAGAGGCACTGGGGGATTTTTGAGTTTGATGGCAAACCAAAGTATGAATTAGACTTAACAGGTCAACATAAGGAAAAGGGTCTTATCCCTGTGGAAGGTATAAAGTACCTGGAAAAGAGGTGGTGTATTTTGGATCCAGATGTTACTAACTTGGATGATTTGGCTGATAGCATTGACTATGCTTGTACCCTTTCTGATTGTACTTCCCTTGGCTATGGCTCTACTTGTAATAATATGAGTCCCCAAGGGAATGCATCTTATGCCTTCAATATGTATTATCAAGTAAATAACCAAAAGGATTGGGACTGTGATTTCTCTGGTTTGGCTGTCATAACACGTAAGGATCCATCACAAAATGGCTGCCAATTCCCTGTAATGATAGCTCGTAGTTCTTCTTTGCTACGGCATGGAGGGCTTTTCGACATCCTAAAGAAAGCAGTAGGGGCATATATTTTTGTCAAGATTTTACTATAG 1458 0.4218 MAPNCGHLVAFLLVFLTVVSSGSAWVGVNWGTMATHQLPPEKVVRMLKENGFTKLKLFEADELIMAALMGTGIEVMVAIPNNLLDKISNSPKAADSWVNDNVTSYLFTGGVKIKYVAVGNEPFLKAYNGTFAKKMLPALTNIQRSLNNARLGSKVKVTVPFNADIYYSPDSNPVPSAGDFRPEVRDLTIEIIQFLYSYNAPFTVNIYPFLSLYGNEDFPFDFAFFDGSSKPLRDGKALYTNVFDANLDTLLWALDKAGYPDMKVIIGEIGWPTDGDKNANAKNAKRFNMGLLKHALSGKGTPKRKGTVDLFLFSLIDENTKSVAPGNFERHWGIFEFDGKPKYELDLTGQHKEKGLIPVEGIKYLEKRWCILDPDVTNLDDLADSIDYACTLSDCTSLGYGSTCNNMSPQGNASYAFNMYYQVNNQKDWDCDFSGLAVITRKDPSQNGCQFPVMIARSSSLLRHGGLFDILKKAVGAYIFVKILL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1960 485 Gene3D Glycosidases 25 355 - -
Ssu1g1960 485 SUPERFAMILY (Trans)glycosidases 26 346 IPR017853 -
Ssu1g1960 485 SMART X8_cls 368 451 IPR012946 -
Ssu1g1960 485 Pfam Glycosyl hydrolases family 17 26 346 IPR000490 GO:0004553|GO:0005975
Ssu1g1960 485 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 6 469 - -
Ssu1g1960 485 Pfam X8 domain 369 437 IPR012946 -
Ssu1g1960 485 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Ssu1g1960 485 Gene3D - 364 460 - -
Ssu1g1960 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 469 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1960 Ssu-Chr1 54875721 54878023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1960 7 455 Miscellaneous Gene Families AT2G19440 57.016 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1960 - - gmx:100781894 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1960 1 54875721 54878023 Ssu1g1960 1 54875721 54878023 ECH