Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1957 atgatgcttaaacTTTTCCATGCAGGTGCAGGATTCATTATGGTTGCAACAGCCGCAACGGCGTCGTTTTTCCCTGTGCCTAAACCAGACTCTGGAAAGCCCACCAAACTGGGTGGTGACCCTGCGACCCTCGGAGGACTCAAACCCAAACAAGGTTCCTGCGGTGGCTTGCAGGTCAAGGCAAACGCGCAGGCCCCTCCGAAGATTAACGGGACCGTGGTGGAGAACGTGAAGGTTGAGGATGATTTGCCATCATCGTCGCTTTCTCGATCCCCGAGGACTTTCATCAACCAGTTACCCGACTGGAGCATGCTTCTCGCCGCAATCACCACCGCCTTCCTCGCTGCGGAAAAGCAGTGGATGATGCTCGACTGGAAGCCGCGGCGCCCCGACATGCTCATTGATCCCTTTGGTATTGGGAAGATCGTGCAGGATGGGCTTGTGTTCAGGCAGAACTTCTCAATTCGGTCCTATGAAATAGGCGCGGATAAAACCGCGTCTATAGAGACGTTAATGAATCATTTGCAGGAGACTGCACTTAATCATGTTAAGACTGCGGGGCTTCTTGGTGATGGTTTTGGTGCCACGCCTGAAATGTGCAAGAAGAACCTGATATGGGTGGTGACAAGGATGCAGGTTGTGGTTGATCGGTATCCTACATGGGGTGATGTTGTTCAAGTAGACACTTGGGTTTCTGCATCAGGGAAGAATGGTATGCATCGTGATTGGCTTGTGCGTGACATCAAAACTGGTGAAACCTTGACAAGAGCCTCCAGTGTATGTGTCATGATGAATAAAGTGACAAGGAGACTGTCTAAAATTCCCGAAGAAGTCAGAGGAGAGATTGGCTCTCATTTTGTGGATTCTGCTCCAGTTGTGGAAGAGGATAACAGAAAACTACCCAAACTTGATGATACAGCCAATTTTATTCGCACTGGTTTAAGTCCCAGATGGAATGATCTAGATGTTAATCAGCATGTTAACAATGTGAAGTATGTTGGGTGGATTCTGGAGAGTGCTCCACAGCTACTTTTGGAGAATCATGAGCTGTGCGCCATGACATTGGAGTACAGGAGGGAATGTGGCAGGAACAGTGTGCTGGATTCCCTTACTGATGTCTCTGGTGCTGATGTAGGCAATTTAGCAGACACTGGATTTTTTGAGTGCAAGCACTTGCTTCGACTTGAAGATGGTGCTGAGATTGTGAGGGGTAGGACTCAGTGGAGGCCCAAACCTGCAAACAACTTTGGAGTTTTGAGTCAGGTTCCAGCAGAAAGCACCTAA 1284 0.486 MMLKLFHAGAGFIMVATAATASFFPVPKPDSGKPTKLGGDPATLGGLKPKQGSCGGLQVKANAQAPPKINGTVVENVKVEDDLPSSSLSRSPRTFINQLPDWSMLLAAITTAFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRQNFSIRSYEIGADKTASIETLMNHLQETALNHVKTAGLLGDGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMHRDWLVRDIKTGETLTRASSVCVMMNKVTRRLSKIPEEVRGEIGSHFVDSAPVVEEDNRKLPKLDDTANFIRTGLSPRWNDLDVNQHVNNVKYVGWILESAPQLLLENHELCAMTLEYRRECGRNSVLDSLTDVSGADVGNLADTGFFECKHLLRLEDGAEIVRGRTQWRPKPANNFGVLSQVPAEST 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1957 427 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 14 416 IPR045023 GO:0006633|GO:0016297
Ssu1g1957 427 Pfam Acyl-ACP thioesterase 146 409 IPR002864 GO:0006633|GO:0016790
Ssu1g1957 427 CDD 4HBT 149 265 - -
Ssu1g1957 427 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 143 295 IPR029069 -
Ssu1g1957 427 Pfam Acyl-ATP thioesterase 14 135 IPR021113 GO:0016790
Ssu1g1957 427 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 308 409 IPR029069 -
Ssu1g1957 427 MobiDBLite consensus disorder prediction 27 49 - -
Ssu1g1957 427 PANTHER PALMITOYL-ACYL CARRIER PROTEIN THIOESTERASE, CHLOROPLASTIC 14 416 - -
Ssu1g1957 427 Gene3D Hotdog Thioesterase 139 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1957 Ssu-Chr1 54746135 54749433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1957 14 417 Acyl Lipid Metabolism Gene Families AT1G08510 72.573 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1957 K10781 - gmx:100797796 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1957 1 54746135 54749433 Ssu1g1957 1 54746135 54749433 ECH