Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1956 ATGTTAAAGCAAATTCTTAGCAAATTGCCTAAGAAGGTTCCAAAATCTGACACATCAGATTCGGCACAGGTTGATTCTGGGAGTACTACTACTTTTGCGAATGTCTTTCAATGTACAAATGTTGGGGTTGCCATTTCAAGCAAATTAAATGCTGTGAAGCGAGTATCTTCAGTGGTATTTCCAGCAAGCATGAGTGCTGGAGTGGAAGCAGTTGATCCCCATATATCTTTCAAAGATGCTTCAAATACACAGAAGCAAAACCTGTTTATTAGTAAGTTGAATCTTTGCTGCAGAGTTTGTGATATGAGGGGTCCTGATAAGAACTGCACAGAGCAAGATGTTAAACGTCAAACATTGGTAGAGCttgttgattttgtttcttCTGGATCTGCAAAGTTCACAGAACCAGCAATAGCCGCAATCTGTAAAATGTGTGCAAGTAATTTGTTCAGGGTTTTCCCACCTAAGTTTCGTCCTAGTGCTACTGGTGGTGAAGCAGAAGATGAAGAGCTTATGTTTGATCCTGCCTGGTCTAACCTGCAAATTGTTTATGATCTTCTccttcaattaataaattataattcacTTGATCTAAAGGTGGCAAAAATGCACATTGATCACACTTTTATTGTAAGATTGCTCGACCTTTTTGATTCTGAGGACCCTAGAGAAAGAGATTGCTTGAAAACAATTCTGCATAGAATCTATGGGAAATTCATGGTACACAGATCTATCATACGAAAATCTGTCAGCAATATCATCTACCATTTTGTTTTTGAGACTGAATGTCATAATGGAATTGCTGAGCTGTTGGAGATTTTTGGTAGTGTGATTTGTGGGTTTGCCTTGCCATTGAAGGAGGAGCACAAAACGTTTTTGTGTAGGGCTTTAATACCTTTACACAAACCTAAATCTGTTGGTATTTATCATCAGCAGTTAACATATTGTGTTGTACAGTTCATAGATAAGGATCCAACACTGGCTAGCACTGTGATAATGGGACTATTGAAGTACTGGCCAGTAACAAATAGCCAAAAGGAGCTAATGTTCATAAGTGAGTTGGAAGAGGTTTTGGAAGTAACAATCATGGTGGAATTTCAGAAGATCATGGTCCCATTGTTTCGCCGCATAGCTTGCTGTCTTAATAGTTATCATTACCAGGTGGCTGAACGAGCTCATTTGCTATGGAACAACGAGTACATCCTAGATGTTGTCACCCAAAATCGGCAGGTGATTCTGCCTCTTGTGTTCTCAGCACTTGTACATAACACCCAAAATCACTGGAATCGAACAGTGCTAAACCAGACTGAGAATATGAGGAAGATGCTGTCTCAGATGGACGAGGATCTGGTACTTTCCTGCCAACGTAAGTTGGAGGAGGAAGATTCAAGGTCAAGCGCCGCAGCTGAACAGCGAAGAATAACGTGGGAACGCCTTGAAGCTGCTGCCAATGTCCAACATGTAGCTGTAGGTGGTGATGTTTTAGCATCTTCTGCATGTTCTGTGGCATGCTAG 1515 0.4 MLKQILSKLPKKVPKSDTSDSAQVDSGSTTTFANVFQCTNVGVAISSKLNAVKRVSSVVFPASMSAGVEAVDPHISFKDASNTQKQNLFISKLNLCCRVCDMRGPDKNCTEQDVKRQTLVELVDFVSSGSAKFTEPAIAAICKMCASNLFRVFPPKFRPSATGGEAEDEELMFDPAWSNLQIVYDLLLQLINYNSLDLKVAKMHIDHTFIVRLLDLFDSEDPRERDCLKTILHRIYGKFMVHRSIIRKSVSNIIYHFVFETECHNGIAELLEIFGSVICGFALPLKEEHKTFLCRALIPLHKPKSVGIYHQQLTYCVVQFIDKDPTLASTVIMGLLKYWPVTNSQKELMFISELEEVLEVTIMVEFQKIMVPLFRRIACCLNSYHYQVAERAHLLWNNEYILDVVTQNRQVILPLVFSALVHNTQNHWNRTVLNQTENMRKMLSQMDEDLVLSCQRKLEEEDSRSSAAAEQRRITWERLEAAANVQHVAVGGDVLASSACSVAC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1956 504 Gene3D - 82 482 IPR011989 -
Ssu1g1956 504 SUPERFAMILY ARM repeat 86 464 IPR016024 -
Ssu1g1956 504 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 76 483 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu1g1956 504 PIRSF PP2A_B56 3 498 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu1g1956 504 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 501 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu1g1956 504 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1956 Ssu-Chr1 54725413 54728729 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1956 K11584 - gmx:100814349 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1956 1 54725413 54728729 Ssu1g1956 1 54725413 54728729 ECH