Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1954 ATGGAGGAGAATTCGAGTGGTTGGGACGCAGAAAAGGTGTTTGAAACCCTAAAAAAAAGAGGTTGGAGTTTGGAAGACACAGACCAATTGAAGGCCATAATCGTCATTCAATCCGCACTCACCGATGACCGTTCCAAGTTGGTAGATTCCGTTGAGTCAGAGCTCCTCAATTCGGACCTTAGATCCATCGGCGCCAAGTCCTTACCCGAACCCTCTCTTCTTCGCAACCCTTCCTCTTTTCTTCACGGCCCCAAAGTCCTTCAGATAACTTCAGTGAGGGACATATCTAAGAGCAGCGTTGATGAATTTTTGAGAAATTCAGGTGGTCGGCGACTTCTCAGATTGTGTCTCACTGATGGTCACTCCGAAATAACTGCTGTGGAATATTCTCACGTTCCTTCTATACCTGATAATGTGGTTCCGGGTACTAAGATCTGTTTGGAAAATAAAGTTGCGGTTCGCAGTGGTATAGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCGTCTTTAAGAAAGCTAGAAAATCGTGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGAAGGTTGGATCTTCCTCAGGTATTGCAGATTATAACACTAGTAGAAGTCGTAAGCCAATTGCTGTGGTTGGTGAAGCTGAGACGAGACCAACTGATATCCAGCAAGACCCTAATCAGAAAGCAGATATTTTGGATGTAAATGTAGAATCCAAACCACCTGAAGAAAAAGCTGAAGACAAGGCTAGTAGTTCAGGCACAAGACCAAAAGAAGTTGTGGAATCTGTTCCTGTGCAAAATCAAGCAGCTGCCCAAAAATTACTTCAGAAACTGAATCACCCAAGTCAGAACGATCGGCATCCTAAGGGTCGGAGACATAGGGGCAAGGGGAGAGAAGAAGATCCAGTTGTATTCACTCTGGAAGAATATGAAAACAGAAAGGCCCAGACAAAGCCTTCTAATAAAGACAAGGATCTGGATATTAGTCGAGATGAGGATCTAGCTAGGCAGCTTCAAAATCAACTTAACCTTGAAGATTCTCGGGTGGGATTGGGTACTTATGAAGCCAAGGCACAAGATATTAGAATGAGTATGTTCACATATGAAAGGGATTCTGACAGCAGCCATCAAATGGCACAAGGAGGAAGTAGGGGAAGGGGAAGGGGAAAGGGTAGAGGAAGAGGGAGAGGAAGATATGGTTAA 1269 0.4389 MEENSSGWDAEKVFETLKKRGWSLEDTDQLKAIIVIQSALTDDRSKLVDSVESELLNSDLRSIGAKSLPEPSLLRNPSSFLHGPKVLQITSVRDISKSSVDEFLRNSGGRRLLRLCLTDGHSEITAVEYSHVPSIPDNVVPGTKICLENKVAVRSGIVCLNPKVLTVLGGVVQSLYEEWEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLKVGSSSGIADYNTSRSRKPIAVVGEAETRPTDIQQDPNQKADILDVNVESKPPEEKAEDKASSSGTRPKEVVESVPVQNQAAAQKLLQKLNHPSQNDRHPKGRRHRGKGREEDPVVFTLEEYENRKAQTKPSNKDKDLDISRDEDLARQLQNQLNLEDSRVGLGTYEAKAQDIRMSMFTYERDSDSSHQMAQGGSRGRGRGKGRGRGRGRYG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1954 422 SMART DUF1767_2 14 104 IPR033472 -
Ssu1g1954 422 MobiDBLite consensus disorder prediction 298 354 - -
Ssu1g1954 422 Gene3D - 59 188 IPR042470 -
Ssu1g1954 422 MobiDBLite consensus disorder prediction 316 354 - -
Ssu1g1954 422 Pfam RecQ mediated genome instability protein 42 181 IPR013894 -
Ssu1g1954 422 PANTHER RE01471P 13 400 - -
Ssu1g1954 422 PANTHER SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED 13 400 - -
Ssu1g1954 422 MobiDBLite consensus disorder prediction 257 276 - -
Ssu1g1954 422 MobiDBLite consensus disorder prediction 389 422 - -
Ssu1g1954 422 MobiDBLite consensus disorder prediction 230 284 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1954 K18404 - gmx:100782461 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1954 1 54713469 54717295 Ssu1g1954 1 54713469 54717295 ECH