Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1952 ATGGGATTCAGTAAATGTGTTTATGTTGCGACTAGTCTCGTGGATATGTACGGCAAGTGTGGGGCTTTGGAGGATGCGGAGAGGGTGTTTGATGGTATGGCTGAGAAAAACGACGTCGCTTGGAACTCCATGATTGTGACGTACACGCAAAACGGAATGAACGAGGAGGCGATTGGGTCGTTTCGGGAGATGAGGTTGCAAGGAGTGGAAGTGACTTCGGTTGCTTTGTCGGGGTTTTTTACGGCGTGTGCGAATTTGGAGGCCGTTGGAGAAGGGAGACAAGGGCACGGTCTTGCTGTTGTGGGAGGGTTGGAGTTGGATAACGTTTTGGGCAGTTCAGTTATGAACTTCTATTTTAAGGTTGGTTTGGTCGAGGAGGCTGAGGTGGTTTTTGGAAACATGGTGATGAAAGATGTGGTGACGTGGAATTTGGTTGTGTCGGGTTACGTGCAGTTTGGGCTGGTTGGGAAGGCGCTTGAGATGTGTCACATGATGAGAGAAGAGAATTTAAGGTTTGACTGCGTGACGTTGTCTTCTTTGTTGGCTGTTGCTGCGGATACAAGAGATGTAGGATTGGGTATGAAGGCGCACGCGTATTGCATTAAGAATGACTTCGAGTGTGATGTGGTTGTTTCCAGTGGCATCGTTGATATGTACGCGAAGTGTGGGAGGATGGATTGTGCGAGAAGAGTTTTCAGCTGTGCCAGGAAGAAGGATATTGTGTTGTGGAATACAATGTTGGCTGCTTGTGCTGAGCAGGGTTTGAGTGGCGAGGCGTTGAAGTTGCTCTTTCAAATGCAGCTAGAGAGTGTGCCCCCGAATGTGGTTTCGTGGAATTCTGTgatttttggtttctttaagAATGGTCAGGTGGCTGTGGCTAGAAACATGTTTGCAGAAATGTGTTCTTCAGGTGTTGTGCCTAATTTGATCACGTGGACGACGGCTATGTGTGGTTTGGCTCAGAATGATCTTGGTTGTGATGCTATGATGGTTTTCAGGGAAATGCAGGATGTGGGGATCAGACCTAATAGCATGAGCATAACTTCTGCACTCACAGGTTGCACAAACATGGCATTGTTGAAATGTGGAAGGGCAATTCATGGGTATGTTATGAGGCATGATATGTCTCAATCTCTTCATATCACAACCTCTGTAATGGATATGTATGCTAAATGTGGAAGTTTGGATGATGCAAAGTGTGTTTTCAACATGTGCTCAACAAAGGAGTTGCCTGTGTACAATGCAATGATATCTGCATATGCATCACATGGTCAAGCTAGAGAAGCCCTTGCACTTTTTAAACAATTGGAGAAAGAAGGAATAGTGCCAGATCACATTACCCTTACTAGTGTGTTGTCAGCATGCAGCCATGGGGGATTGGTGAAGGAGGGCATGGAGGTTTTCAAATATATGGTCTCTGAGCTCCAAATGAAGCCGAGTGAAGAACATTATGGTTGTTTGGTGAAACTTCTTGCCAACGATGGCCAGTTGGATGAAGCTCTTAGGACTATTTTGACAATGCCAAGCCATCCAGATGAACATATATTAGGATCTCTGCTTGCGGCTTGTGGACAAAATCATGATATTGAACTTGCAGATTATATAGCAAAATGGTTGTTGAAATTGGACCCAGATAATTCAGGGAATTATGTGGCTCTGTCAAATGTATATGCAACTGTAGGAAAATGGGATAAGGTGTCAAATATAAGGGGCTTAATGAAAGAAAAGGGTCTGAGAAAGATTCCTGGGCGTAGCTGGATTGAAGTTGGACAAGAACTTCATGTATTTATTGCTAGCGATAGATCACACCCCAAAACAGATGAGATTTATGTGACATTGGATTTGTTGGGATTTGAAATGCGTTATGCAAAATATTCCCCTTATATACAGTACTAA 1899 0.4397 MGFSKCVYVATSLVDMYGKCGALEDAERVFDGMAEKNDVAWNSMIVTYTQNGMNEEAIGSFREMRLQGVEVTSVALSGFFTACANLEAVGEGRQGHGLAVVGGLELDNVLGSSVMNFYFKVGLVEEAEVVFGNMVMKDVVTWNLVVSGYVQFGLVGKALEMCHMMREENLRFDCVTLSSLLAVAADTRDVGLGMKAHAYCIKNDFECDVVVSSGIVDMYAKCGRMDCARRVFSCARKKDIVLWNTMLAACAEQGLSGEALKLLFQMQLESVPPNVVSWNSVIFGFFKNGQVAVARNMFAEMCSSGVVPNLITWTTAMCGLAQNDLGCDAMMVFREMQDVGIRPNSMSITSALTGCTNMALLKCGRAIHGYVMRHDMSQSLHITTSVMDMYAKCGSLDDAKCVFNMCSTKELPVYNAMISAYASHGQAREALALFKQLEKEGIVPDHITLTSVLSACSHGGLVKEGMEVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDEALRTILTMPSHPDEHILGSLLAACGQNHDIELADYIAKWLLKLDPDNSGNYVALSNVYATVGKWDKVSNIRGLMKEKGLRKIPGRSWIEVGQELHVFIASDRSHPKTDEIYVTLDLLGFEMRYAKYSPYIQY 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1952 632 SUPERFAMILY TPR-like 390 567 IPR011990 GO:0005515
Ssu1g1952 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Ssu1g1952 632 Gene3D Tetratricopeptide repeat domain 91 213 IPR011990 GO:0005515
Ssu1g1952 632 Gene3D Tetratricopeptide repeat domain 363 609 IPR011990 GO:0005515
Ssu1g1952 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 136 - -
Ssu1g1952 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 319 610 - -
Ssu1g1952 632 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Ssu1g1952 632 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Ssu1g1952 632 TIGRFAM PPR: pentatricopeptide repeat domain 140 173 IPR002885 -
Ssu1g1952 632 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Ssu1g1952 632 TIGRFAM PPR: pentatricopeptide repeat domain 413 445 IPR002885 -
Ssu1g1952 632 Pfam E motif 529 589 IPR046848 -
Ssu1g1952 632 Gene3D Tetratricopeptide repeat domain 1 90 IPR011990 GO:0005515
Ssu1g1952 632 Gene3D Tetratricopeptide repeat domain 266 362 IPR011990 GO:0005515
Ssu1g1952 632 PANTHER OS07G0578800 PROTEIN-RELATED 319 610 IPR045215 GO:0003723|GO:0009451
Ssu1g1952 632 PANTHER OS07G0578800 PROTEIN-RELATED 2 136 IPR045215 GO:0003723|GO:0009451
Ssu1g1952 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Ssu1g1952 632 Pfam PPR repeat 384 405 IPR002885 -
Ssu1g1952 632 Pfam PPR repeat 11 37 IPR002885 -
Ssu1g1952 632 Pfam PPR repeat 241 268 IPR002885 -
Ssu1g1952 632 Pfam PPR repeat 112 138 IPR002885 -
Ssu1g1952 632 Pfam PPR repeat 39 69 IPR002885 -
Ssu1g1952 632 Pfam PPR repeat 140 169 IPR002885 -
Ssu1g1952 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 137 184 - -
Ssu1g1952 632 Pfam PPR repeat family 273 321 IPR002885 -
Ssu1g1952 632 Pfam PPR repeat family 413 457 IPR002885 -
Ssu1g1952 632 PANTHER OS07G0578800 PROTEIN-RELATED 157 330 IPR045215 GO:0003723|GO:0009451
Ssu1g1952 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 71 IPR002885 -
Ssu1g1952 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Ssu1g1952 632 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 157 330 - -
Ssu1g1952 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Ssu1g1952 632 PANTHER OS07G0578800 PROTEIN-RELATED 137 184 IPR045215 GO:0003723|GO:0009451
Ssu1g1952 632 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Ssu1g1952 632 SUPERFAMILY TPR-like 20 566 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1952 Ssu-Chr1 54640453 54642351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1952 1 92 Glycoside Hydrolase AT3G49170 32.609 3.41e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1952 - - gmx:100806010 1110.9