Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1943 ATGGCCGCTTCCAACCTCTCCCACCAAACTTCACGGCCGTTCCCCACGGCGTGCGTCAGCTCCCGGCCACCAAGCACCGCTATTAGCCTCCGGCGGCACCTCCCACCTCCTGCCAAGCCCCGAAAACTGGCCCTCAAAGCCGAAACCAACAGCCGCTTCATGTGGGCCATTCAACTGAGCCTAGTGGAGCAAAGCCCACCCAAATCAACGTTCGACATGCTGCAACTCGTGGGCTTTCTCTACGACGATCTCCCACACCTCTTCGACGATCAGGGTATCGATAAAACGGCCTATGACGAACGTGTCTTCTTTCGAGACCCAATCACCAAACATGATACTTTGAGCGGCTACCTTTTCAACATTGCTCTTCTCAGAACACTCTTCGGGCCCCAGTTTCAGCTGCATTGGGTCAAACCGACAGGACCGTATGAGATAACTACAAGGTGGACCATGGTTATGAAATTCGTGCTACTTCCGTGGAAACCGGAACTGGTCTTCACAGGAACTTCCGTTATGGGAATTAACCCAGAAAATGGCAAGTTTTGTAGCCACGTGGACTTTTGGGATTCAATAGagaaaaatgactatttttctCTGGAAGGTTTGTGGGACGTAATCAAACAGTTGAGGATTTATAAGACACCAGAATTGGAATCACCTAAATATCAAGTATTGAAAAGAACGGCAAATTATGAGGTTAGACAGTATGATCCATTCATAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGTCTACTGGCTTTAACGATGTTGCTGGATATATATTTGGAAAGAATTCCACTATGGAGAAGATACCAATGACTACTCCTGTCTTCACTCAAGCCAATGATGCTGACCTGTCCAAAGTGTCAATCCAAATAGTTCTTCCTTTAGACAAAGAAACAGAAAGTTTACCAAGTCCTAATCAAGAAACAGTTCGCTTGAGAAAGGTTGAAGGAGGCATTGCTGCGGTAATGAAGTTTAGTGGAAAACCCGTGGAGGATATTGTTCGGGAAAAGGAGAAAACCTTGCACTCTAATATCATTAAAGATGGTCTTAAACCTCAGCCAGGTTGTTTGCTAGCACGGTACAATGATCCAGGTCGAACATGGACCTTTATAATGAGGAATGAAGTGCTCATATGGCTAGATGACTTCTCGTTGGATTAG 1170 0.4547 MAASNLSHQTSRPFPTACVSSRPPSTAISLRRHLPPPAKPRKLALKAETNSRFMWAIQLSLVEQSPPKSTFDMLQLVGFLYDDLPHLFDDQGIDKTAYDERVFFRDPITKHDTLSGYLFNIALLRTLFGPQFQLHWVKPTGPYEITTRWTMVMKFVLLPWKPELVFTGTSVMGINPENGKFCSHVDFWDSIEKNDYFSLEGLWDVIKQLRIYKTPELESPKYQVLKRTANYEVRQYDPFIVVETNGDKLSGSTGFNDVAGYIFGKNSTMEKIPMTTPVFTQANDADLSKVSIQIVLPLDKETESLPSPNQETVRLRKVEGGIAAVMKFSGKPVEDIVREKEKTLHSNIIKDGLKPQPGCLLARYNDPGRTWTFIMRNEVLIWLDDFSLD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1943 389 Pfam Uncharacterized conserved protein (DUF2358) 76 184 IPR018790 -
Ssu1g1943 389 SUPERFAMILY NTF2-like 95 189 IPR032710 -
Ssu1g1943 389 PANTHER SOUL HEME-BINDING FAMILY PROTEIN 56 389 - -
Ssu1g1943 389 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g1943 389 Pfam SOUL heme-binding protein 217 381 IPR006917 -
Ssu1g1943 389 PANTHER HEME-BINDING PROTEIN-RELATED 56 389 IPR006917 -
Ssu1g1943 389 MobiDBLite consensus disorder prediction 1 39 - -
Ssu1g1943 389 Gene3D Regulatory factor, effector binding domain 216 386 IPR011256 -
Ssu1g1943 389 SUPERFAMILY Probable bacterial effector-binding domain 208 383 IPR011256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1943 Ssu-Chr1 54313143 54317809 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1943 - - gmx:100789568 716.457