Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1928 ATGGCGAGCTCAGTGGAGAAGGAGGGTGGTGCGAGCGAGGAAACTTTTTCTTTGGAGCTACCTGCTCCACCTGGTTGGAAGAAGAAGTTCACCCCAAAGAAAGCTGGAACCCCGAAGAAAAATGAGATTGTGTTCACTGCACCAACAGGAGAGGAGATCAATAACAGGAAGCAGctggaaaaatatttgaaagcaCACCCTGGTGGTCCAGCTGTATCAGAATTTGATTGGGGCACTGGTGAGACCCCAAGAAGATCTGCAAGAATCAGTGAGAAGGCCAAGGCAGCTCCTCCAGCAGAAAGGGAGCCCCCAAAGAAACGTAGAAAAAGATCATCAGCTTCAGAaaaggaaacttcccaggaagAAAAGGAGGAGACAAAAGAAGCGGAAATGCAAGAAACTGATGACACTAAGGATGATAAAGATATAGAGGAGGAAAAGAACgttgtaaaagaaaatcaagTTGACAATAGTGTGGAGGATACAGATGTCAACAAATCCATTCATTCTGGAGAAGCTAAAGCTGGAGAAAATGTCGAGGTACCTATTGATGTGGAAAAATCCAATGCTGCTGATGGAGAACCACATGCATTGAAAGATAAAGTTGATGACAAAGGAGCTGATGGTTCTGAAGTTTCTCTgagaaaagatgaagaaaagattGATCAACCacaggaagagaaaaaaggatatCGGGAATCTGAGGGGCTAGAGAAATCGGAAACATGCACTACTGCTGGCAAAACAGTTGAAGTGGAAGGAGTGAATAAGGAGGAATACATCAAAAGTACTCTTGAATTTGAAGTTGAGGAAATGGAAGGAACAAAGGTGAATAGTGAAGAACATCACAAGCTTGATGAGATAAATAAGAAGGCTGAAGCAGAGTTGACCGAGAATGGCAATCATGGGAGTTGA 915 0.3945 MASSVEKEGGASEETFSLELPAPPGWKKKFTPKKAGTPKKNEIVFTAPTGEEINNRKQLEKYLKAHPGGPAVSEFDWGTGETPRRSARISEKAKAAPPAEREPPKKRRKRSSASEKETSQEEKEETKEAEMQETDDTKDDKDIEEEKNVVKENQVDNSVEDTDVNKSIHSGEAKAGENVEVPIDVEKSNAADGEPHALKDKVDDKGADGSEVSLRKDEEKIDQPQEEKKGYRESEGLEKSETCTTAGKTVEVEGVNKEEYIKSTLEFEVEEMEGTKVNSEEHHKLDEINKKAEAELTENGNHGS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1928 304 Gene3D - 14 87 - -
Ssu1g1928 304 MobiDBLite consensus disorder prediction 272 297 - -
Ssu1g1928 304 SUPERFAMILY DNA-binding domain 13 110 IPR016177 GO:0003677
Ssu1g1928 304 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 12 82 IPR001739 GO:0003677
Ssu1g1928 304 MobiDBLite consensus disorder prediction 1 245 - -
Ssu1g1928 304 MobiDBLite consensus disorder prediction 272 304 - -
Ssu1g1928 304 Pfam Methyl-CpG binding domain 17 81 IPR001739 GO:0003677
Ssu1g1928 304 MobiDBLite consensus disorder prediction 85 170 - -
Ssu1g1928 304 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE 1 303 - -
Ssu1g1928 304 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 303 IPR039622 -
Ssu1g1928 304 MobiDBLite consensus disorder prediction 187 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1928 Ssu-Chr1 53144416 53149269 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1928 - - gmx:100814375 402.905