Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1908 ATGATAACTAAggtgtattttcttttcttctcgaATGAGGCTCAAACCAGCTTAACCAATGGATCAACTGTTGCGAGTTGTTCCAACCTAACTAGTGGTCTAGAGTTCGAGTCCTGGGTGCACCGTGCACCCCAAGTGTCCAACTTTGACTTCAAAACTGACGATGCTTTTGTTCTGTCAGTTGAGCCAGGATCTGATGATATCGTCGTGAAGAATCTGTATATCTCTGTTGACCCGTATCAGATTCACCACATGAAGAGCAAAAGCCCTTCCCATAGTTCTATAAGCGCTGCAATGCGCATAAACCCAGGCGAGGCTATTGATTCTAGTGCTATTGGAAAAGTTGTGGCTTCTGGAAATGCTAAGTTTCAGAAAGATGATTTGGTGATGGGATTTTTCACTTTGGCAGAGTACAGTTTGGTTAAAGAAGATAGCATAACACACAAAATAGAATCCCCTGAATTTCCACTCTCCTATCATCTTGGAGTTCTGGGATTTAGTGGACTATCAGCCTATGCAGGATTTTTCGAAGGGTGCAGACCCCGGAAGGGTGAAAAGGTATTTGTCTCAGCTGGCCCTGGATCAGTTGGAAATTTGGTAGGTCAATATGCAAAAATATTGGGCTGCTATGTTGTTGGCTGCGCTGGGAGCCAGAAAAAGGTGGAATTGCTTAAAGAAAAGCTAGGATTTGATGATGCATTCAACTACAAGgaacatggttctaaattgcggttgcggtcGTATTTCCCTGATggaattgatatatattttgacaaTGTTGGGGGTGAGTTGCTGGAGGCAGCGGTTGCTAATATGAAAGCATTTGGAAGAGTGGCTGTTCGTGGGGTAATCTCCGAGTACACTGATGCTGGAAAGAGAGCTTCACCAGACATGTTGCACGTTGTGCTCAAGAGAATCACCATCAGAGGATTTTTAGTATCTGACTTGATGAATGTTTTCGCAGAGTTTTTGGCAAAAACATTAGGGTACCTTTGTACAGGGAAGTTAAAGGTGATTGAAGATATATATCATCGGGTGTGGAGAGCATCCCTTCTGCTTTCGTTGAACTTTTCAATGGAGGTAACATTGGaaagaaaattgtga 1104 0.4004 MITKVYFLFFSNEAQTSLTNGSTVASCSNLTSGLEFESWVHRAPQVSNFDFKTDDAFVLSVEPGSDDIVVKNLYISVDPYQIHHMKSKSPSHSSISAAMRINPGEAIDSSAIGKVVASGNAKFQKDDLVMGFFTLAEYSLVKEDSITHKIESPEFPLSYHLGVLGFSGLSAYAGFFEGCRPRKGEKVFVSAGPGSVGNLVGQYAKILGCYVVGCAGSQKKVELLKEKLGFDDAFNYKEHGSKLRLRSYFPDGIDIYFDNVGGELLEAAVANMKAFGRVAVRGVISEYTDAGKRASPDMLHVVLKRITIRGFLVSDLMNVFAEFLAKTLGYLCTGKLKVIEDIYHRVWRASLLLSLNFSMEVTLERKL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1908 367 PANTHER PROSTAGLANDIN REDUCTASE 39 344 IPR045010 GO:0016628
Ssu1g1908 367 SUPERFAMILY GroES-like 37 174 IPR011032 -
Ssu1g1908 367 Pfam N-terminal domain of oxidoreductase 42 147 IPR041694 -
Ssu1g1908 367 Gene3D - 41 344 - -
Ssu1g1908 367 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Ssu1g1908 367 PANTHER OS06G0602900 PROTEIN 39 344 - -
Ssu1g1908 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 160 335 IPR036291 -
Ssu1g1908 367 Gene3D - 163 338 - -
Ssu1g1908 367 SMART PKS_ER_names_mod 44 353 IPR020843 GO:0016491
Ssu1g1908 367 Pfam Zinc-binding dehydrogenase 196 324 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1908 Ssu-Chr1 52345578 52351412 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1908 - - gmx:100808819 437.958