Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1841 ATGACCCATTGGAGTACTGATTGCCAGGTAGAAAGAGGggtagaaaaagaagataaattggGGATGGATGTGGGCAAAAGGAGGGTCGGGGCTAGAGGGAGTGTGGTTGCAGGGTCAGTGTGGGAGAGCAGGATGAAGAGTGATGAAGTGAGAGGGGGGATCAAGGTGTTCAATGCAGAAGAAAATTCTGAAGaaaatggtggtggtggtagtggtggtagtgCCAGATTGAAAAGAAGCCCAGTTGgatgtggaaaaagaaaaacttggaAATCAGAGAGCTCTGAGGGGTCTGATAATAAGATCCCAATTCAGGTGGCCAGAGGAAAGCCAGAGACCCAGAAAAACTCAGAGGAACAGTGTAAGGAGCTGAGCATTTCTCCCTCTGATGGAATCAAGAAGAGCCCAATTCACAACAGAAAGATTGGTGCTTTTGCAGATAAATTTGAGAGAAGCCCAATTCAGACCAGAAAACTGAGATCTGAATCACAGAAGGGTGGTTCAGAGGTTGGCAGAGAAGGTGGTGAATCAGGTGAGGGCCATGAGAGGAGTCCAGCACAATTGAGGAAGACCAAGTCAGATTCAATCAAGAAGAATACTTCGCTTGGCCCTGCTAGTAGTTCAATTCAATTGAGGAAGACGAAATCTGAGTCGGATCGAGTTCCTGATGAGTCAACGGATGAAAAGATTGAAGTTGAGAATGGGAAGAATGATGCTGCTGATGAAAATTGCAAGGATTTGGATTATGTGTGCCAAGAGAAGGTGATATCTAGCAGCTCAGAGAATGTGGTCCAAGGTTCAACAGAATTGTCGGTGCAGGTTGGTGGTGATTCAgatgttgttgttgatgaagcagatgaagaagaagaagaggaagaggaggaggaggttgagatTGAGATGGCGAAGGAGAGAATTGATGTGAAGGAAATTAGTATTCCAGAATCTAAGGTTGTGAAGGAGCCAGAGAATAATGAGGTCGTTGTGAATGAACAAGACAAGAAGGTTGTTGTGAATGAACCAGAAAAGAAGGTGGTTATGAATGAACCGGAAAAGAAGGTGGTTGTGAATGAACCAGAACCTAAGAAGATTCTGAAGGAACCAGAACCTAAGAAGATTCTAATTGAACCAGAACCTAAGAGGGTTGTGAGTGCCCACACGCGATTTCATCTCAGAAATGAAAGAAGGCCAGTTTCTGCCCCTCTTGCTCTTAAGCAAACTCCTCCAATTAGAAGGAATTCCACAATTCACCAAAATTTCTCCCAAGCTAATTCAATTCCAAAGGCAGAAGAATATCGTAGCTTTCCCCAAACCCAAAGCAAGTTGCAGACTCTAGTGGATTTAATCATGTGGAGAGATGTTTCAAGATCAGCATTTGTTTTCGGATTTGGAACATTCGTCATAGTATCATCTTCTTATGCAAAGGATATCAATCTGAGTCTTATTTCAGTAATGTCCTATATAAGTCTGGTTTATCTTGCTGTTATCTTCCTATATAGATCCCTAATTTGCAGGGGAGTCATAGACGTTGAGGACTCAAATTATGTAGTGGGAGAAGAAGATGCAATTTGGATGTTAAAATTGATCCTCCCTTACTTGAATGAGTTCCTGTCAAAACTTAAAGCCCTGTTTTCTGGAGATCCGGGTACCACAATAAAgTTGGCAGTTTTGCTCTTTGTTTTGGCTAGATGTGGCAGCTGCATAACCATTTGGAAGATGGCCAAATTTGGCTTCTTTGGAGTTTTTACCGTACCAAAGATATGCTCTTCGTATTCTGCACAGTTAACTGCATATGCAAATTTTTGGATTCGTCGATTCCGTGATGCATGGGATTCATGCACTCACAAGAAAGCCGTGGCTCTTGGCATCTTTGGGCTTGTGTGGAATTTATCGTCAGTTGTTGCTCGCATTTGGGCAGATATTATCAACAGCATTATTTGGAGAGAGATGAATGGGGGGAAGATGAAGTAG 1971 0.3993 MTHWSTDCQVERGVEKEDKLGMDVGKRRVGARGSVVAGSVWESRMKSDEVRGGIKVFNAEENSEENGGGGSGGSARLKRSPVGCGKRKTWKSESSEGSDNKIPIQVARGKPETQKNSEEQCKELSISPSDGIKKSPIHNRKIGAFADKFERSPIQTRKLRSESQKGGSEVGREGGESGEGHERSPAQLRKTKSDSIKKNTSLGPASSSIQLRKTKSESDRVPDESTDEKIEVENGKNDAADENCKDLDYVCQEKVISSSSENVVQGSTELSVQVGGDSDVVVDEADEEEEEEEEEEVEIEMAKERIDVKEISIPESKVVKEPENNEVVVNEQDKKVVVNEPEKKVVMNEPEKKVVVNEPEPKKILKEPEPKKILIEPEPKRVVSAHTRFHLRNERRPVSAPLALKQTPPIRRNSTIHQNFSQANSIPKAEEYRSFPQTQSKLQTLVDLIMWRDVSRSAFVFGFGTFVIVSSSYAKDINLSLISVMSYISLVYLAVIFLYRSLICRGVIDVEDSNYVVGEEDAIWMLKLILPYLNEFLSKLKALFSGDPGTTIKLAVLLFVLARCGSCITIWKMAKFGFFGVFTVPKICSSYSAQLTAYANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWADIINSIIWREMNGGKMK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1841 656 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 258 299 - -
Ssu1g1841 656 PANTHER RETICULON-LIKE PROTEIN B17 22 639 IPR044647 -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 258 274 - -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 134 196 - -
Ssu1g1841 656 Pfam Reticulon 446 599 IPR003388 -
Ssu1g1841 656 ProSiteProfiles Reticulon domain profile. 445 608 IPR003388 -
Ssu1g1841 656 Coils Coil 282 307 - -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 280 299 - -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 197 212 - -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 57 242 - -
Ssu1g1841 656 PANTHER RETICULON-LIKE PROTEIN B21 22 639 - -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 213 242 - -
Ssu1g1841 656 MobiDBLite consensus disorder prediction 9 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1841 Ssu-Chr1 47007152 47011049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1841 K20720 - gmx:100801188 768.844