Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1797 ATGGCTGGTGGGTCTTTCACAACAGGTACTGTGACCAAGGAGAGGGCAGAGCAGTACAAGGGGAGAGTCACCCCTTATGTCATCGTCGCTTGCATTGTTGCCGCCACAGGGGGGTCTCTCTTTGGCTATGATATTGGGATTTCAGGCGGGGTTACATCCATGGATGACTTTCTTAAAAAGTTCTTCCCCTCAGTATACAGACATAAATTGCATGCACATGAAAACAACTACTGCAAGTACGACAATCAGGGCCTTGCAGCATTTACCTCTTCTCTATACATTGCTGGTTTAATTGCATCCCTGATGGCATCTCCAGTGACAAGAAAGTATGGACGTCGAGCAAGTATCATAGGTGGTGGTATCAGCTTTCTTATTGGATCAGCTTTGAATGCTTCAGCTGTTAACCTGTCAATGCTGATCTTAGGCCGGGTGATGCTTGGTGTTGGAATTGGGTTTGGAAATCAGGCTATTCCGCTGTATTTGTCAGAGATGGCACCAACACACCTTCGAGGAGGCCTGAACATGTTGTTTCAAGTTGCAACCACTTTAGGGATTTTCACAGCTAACATGGTCAATTATGGAACACAGAAGATCAAGCCTTGGGGTTGGAGGCTGTCCCTAGGCTTGGCTGCGGTACCAGCTCTTCTGATGACTGTGGGAGGGATATTTCTTCCTGATACTCCAAATAGCTTAATCGAACGAGGATTGATGGACAAAGGAAGGAAGCTGCTAGAAAAAATCAGAGGAACTAACGAGGTTGATGCAGAGTTCCAAGATATGGTTGATGCAAGTGAGTTGGCGAACTCAATAGAGCACCCATTTCGTAACATCCTTGAAAGAAGGTACAGGCCAGAGTTGGTGATGGCAATCTTCATGCCTACCTTTCAGATCCTGACTGGCATAAATTCCATTCTCTTCTATGCTCCAGTGCTGTTTCAAAGCATGGGATTTGGAGGAGATGCATCACTCATCTCTTCAGCTTTGACTGGTGGAGTTCTTGCTAGTTCAACATTCATTTCCATAGCAACAGTAGATAGGTTGGGAAGGAGAGTTCTTCTTATCAGTGGCGGAATACAGATGATCACATGCCAGGTTATAGTGGCCATTATTTTAGGGGTCAAGTTTGGAACCGACCAAGAATTGTCAAAAGGCTATTCAATTTTGGTCGTTGTGGTGATTTGCCTATTTGTTGTTGCTTTTGGATGGTCATGGGGCCCACTTGGCTGGACAGTCCCTAGTGAGATATTTCCATTGGAAATCCGGTCAGCAGGGCAGAGCATCACGGTTGCTGTAAACCTTCTCTTCACTTTCATAATTGCCCAGGCCTTCCTTGCTCTTCTCTGCTCATTCAAGTTTGGgatctttctcttctttgctGGCTGGATTACCATCATGACCATATTTGTTTATGTGTTCCTACCTGAAACCAAAGGGATTCCCATTGAAGAAATGTCATTTATGTGGAGGAAGCACTGGTTCTGGAAAAGGATATGCCTCACAACTGACGGTAGTATCTGA 1518 0.448 MAGGSFTTGTVTKERAEQYKGRVTPYVIVACIVAATGGSLFGYDIGISGGVTSMDDFLKKFFPSVYRHKLHAHENNYCKYDNQGLAAFTSSLYIAGLIASLMASPVTRKYGRRASIIGGGISFLIGSALNASAVNLSMLILGRVMLGVGIGFGNQAIPLYLSEMAPTHLRGGLNMLFQVATTLGIFTANMVNYGTQKIKPWGWRLSLGLAAVPALLMTVGGIFLPDTPNSLIERGLMDKGRKLLEKIRGTNEVDAEFQDMVDASELANSIEHPFRNILERRYRPELVMAIFMPTFQILTGINSILFYAPVLFQSMGFGGDASLISSALTGGVLASSTFISIATVDRLGRRVLLISGGIQMITCQVIVAIILGVKFGTDQELSKGYSILVVVVICLFVVAFGWSWGPLGWTVPSEIFPLEIRSAGQSITVAVNLLFTFIIAQAFLALLCSFKFGIFLFFAGWITIMTIFVYVFLPETKGIPIEEMSFMWRKHWFWKRICLTTDGSI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1797 505 CDD MFS_STP 33 475 IPR044778 GO:0015145|GO:0015749
Ssu1g1797 505 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1797 505 ProSitePatterns Sugar transport proteins signature 1. 340 357 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu1g1797 505 PANTHER - 4 498 - -
Ssu1g1797 505 Pfam Sugar (and other) transporter 31 488 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g1797 505 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Ssu1g1797 505 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 4 498 IPR045262 GO:0015144
Ssu1g1797 505 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1797 505 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1797 505 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1797 505 PRINTS Sugar transporter signature 140 159 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1797 505 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g1797 505 ProSitePatterns Sugar transport proteins signature 2. 145 170 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu1g1797 505 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 477 IPR020846 GO:0022857
Ssu1g1797 505 Gene3D MFS general substrate transporter like domains 19 491 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1797 Ssu-Chr1 44933081 44937353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1797 1 497 Organic Solute Cotransporters AT4G02050 79.879 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1797 K24193 - gmx:100820434 937.947