Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1770 ATGAGCAACATGGCTTCCTTAAGCTCCCTAGTGCTGCTCCTTGCAGCTCTGATTCTATCCCCTCAAGGGCTTGCTAACTATGACAAGCCCCCAGTAGAGAATCCACCAGTGTACAAGCCCCCAATTGAGAAACCACCTGTGTACAAACCTCCAGTTGAGAATCCTCCCATTTACAAGCCCCCAGTTGAGAAACCACCTGTGTACAAGCCTCCAGTTGAGAAGCCACCAGTGTACAAACCCCCAGTTGAGAAACCACCTGTATACAATCCCCCAGTTGAGAAACCACCAGTGTACAATCCCCCAGTTGAGAAACCACCAGTGTACAAGCCCCCAGTTGAAAAACCACCTGTGTACAAACCCCCAGTTGAAAAACCACCTGCATACAAGCCACCATATGGGAAGCCACCTGTGCATGAGCTTAATTATGAGAAGCCACCAGTTGAGAACCCCCCTGTCTATAAGCGCCCAGTTGAGAAACCACCAGTTTACAAGCCACCAGTTGAGAAACCACCAGTTTACAAGCCACCAGTTGAGAAACCCCCTGTGTACAAGCCACCATACGGGAAGCCACCTTACCCGAAGCACCCTCCAACAGATGACACTCGTTTCTGA 612 0.5016 MSNMASLSSLVLLLAALILSPQGLANYDKPPVENPPVYKPPIEKPPVYKPPVENPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYNPPVEKPPVYNPPVEKPPVYKPPVEKPPVYKPPVEKPPAYKPPYGKPPVHELNYEKPPVENPPVYKRPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPYGKPPYPKHPPTDDTRF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1770 203 Pfam Extensin-like protein repeat 115 124 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 170 179 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 55 64 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 160 169 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 80 89 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 150 159 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 180 187 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 95 104 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 45 54 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 65 74 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 100 109 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 35 44 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 75 84 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 125 132 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 105 114 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 85 94 IPR003883 GO:0005199
Ssu1g1770 203 Pfam Extensin-like protein repeat 90 99 IPR003883 GO:0005199
Ssu1g1770 203 PANTHER - 4 196 - -
Ssu1g1770 203 MobiDBLite consensus disorder prediction 149 194 - -
Ssu1g1770 203 MobiDBLite consensus disorder prediction 89 203 - -
Ssu1g1770 203 PANTHER EARLY NODULIN-11 4 196 - -
Ssu1g1770 203 PRINTS Adhesive plaque protein signature 159 178 IPR002964 GO:0005576
Ssu1g1770 203 PRINTS Adhesive plaque protein signature 59 80 IPR002964 GO:0005576
Ssu1g1770 203 PRINTS Adhesive plaque protein signature 118 135 IPR002964 GO:0005576
Ssu1g1770 203 MobiDBLite consensus disorder prediction 89 133 - -
Ssu1g1770 203 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1770 Ssu-Chr1 44077129 44077740 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1770 - K01050 var:108330173 50.0618